Factsheet for VIT_15s0048g00370.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046962_P002	Maize	cytosol	13.02	84.35
GSMUA_AchrUn_...	Banana	cytosol	49.13	84.14
Os06t0133800-01	Rice	extracellular, plastid	75.97	83.48
VIT_16s0022g01440.t01	Wine grape	plastid	79.73	81.48
GSMUA_Achr9P20740_001	Banana	peroxisome	65.37	81.44
TraesCSU01G063400.1	Wheat	peroxisome	68.46	80.57
TraesCS7A01G071100.2	Wheat	peroxisome	68.46	80.57
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	18.52	80.23
HORVU7Hr1G013600.3	Barley	peroxisome	72.35	79.03
GSMUA_Achr3P11500_001	Banana	cytosol	15.03	78.32
CDY41143	Canola	plastid	77.58	78.32
Bra007555.1-P	Field mustard	plastid	77.32	78.05
GSMUA_Achr3P11550_001	Banana	plastid	78.52	77.9
CDX71785	Canola	plastid	77.18	77.81
AT2G45290.1	Thale cress	plastid	77.32	77.73
Bra014473.1-P	Field mustard	plastid	76.64	77.69
CDX89074	Canola	plastid	76.64	77.69
CDY48374	Canola	plastid	76.51	77.55
AT3G60750.1	Thale cress	plastid	77.05	77.46
CDX74726	Canola	plastid	76.38	77.31
Bra004898.1-P	Field mustard	plastid	76.24	77.17
CDY68196	Canola	plastid	75.97	76.9
PGSC0003DMT400056799	Potato	cytosol, plastid	75.84	76.25
Solyc10g018300.1.1	Tomato	plastid	75.57	75.98
PGSC0003DMT400018062	Potato	cytosol, extracellular	75.57	75.47
GSMUA_Achr1P19800_001	Banana	plastid	67.38	74.81
TraesCS7D01G066500.1	Wheat	plastid	73.56	73.56
Solyc05g050970.2.1	Tomato	plastid	75.57	72.74
Bra003426.1-P	Field mustard	cytosol	45.1	72.73
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	33.69	71.92
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	37.99	68.36
CDX67840	Canola	mitochondrion	46.04	68.06
CDY31467	Canola	plastid	21.88	66.26
OQU80099	Sorghum	plastid	5.64	50.6
VIT_13s0019g04500.t01	Wine grape	plastid	42.15	49.37

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	EntrezGene:100262551
wikigene:100262551	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:3.9.2.3	EMBL:AM478612	ProteinID:CAN72939
ProteinID:CAN72939.1	ProteinID:CCB61415	ProteinID:CCB61415.1	UniProt:F6I397	EMBL:FN596739	GO:GO:0003674
GO:GO:0003824	GO:GO:0004802	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	InterPro:IPR009014
EntrezGene:LOC100262551	wikigene:LOC100262551	PFAM:PF00456	PFAM:PF02779	PFAM:PF02780	ScanProsite:PS00801
ScanProsite:PS00802	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
TIGR:TC52548	TIGR:TC58346	InterPro:THDP-binding	TIGRFAMs:TIGR00232	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	UniParc:UPI0001984D99
ArrayExpress:VIT_15s0048g00370	EnsemblPlantsGene:VIT_15s0048g00370	EnsemblPlants:VIT_15s0048g00370.t01	unigene:Vvi.1274	RefSeq:XP_002280760	RefSeq:XP_002280760.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr15:-:14506758..14510674

Molecular Weight (calculated)

80670.0 Da

IEP (calculated)

7.071

GRAVY (calculated)

-0.197

Length

745 amino acids

Sequence
(BLAST)

001: MASSSSLSIS QAIVAGALNH RGSTNSSDRL PLRSFTIPTF SGLKSTTSAA SCPSRLGSAR RRLCRRLAVQ AASVETLEKT ETTLIEKSVN TIRFLAVDSV
101: EKANSGHPGL PMGCAPMGHV LYDEFMKFNP KNPYWFNRDR FVLSAGHGCM LQYALLHLAG YDSVREEDLK SFRQWGSTTP GHPENFETPG VEVTTGPLGQ
201: GIANAVGLAL AERHLAARFN KPDNEIVDHY TYVILGDGCQ MEGVAHEACS LAGHWGLGKL IALYDDNHIS IDGDTEIAFT ENVDLRFEAL GWHVIWVKNG
301: NTGYDEIRAA IKEAKTVKDK PTLIKVTTTI GYGSPNKSNS YSVHGSALGP KELDATRKNL RWPYEPFHVP EDVKKHWSRH VPEGAALEAE WNAQFAEYER
401: KYKEEAAVLK SLINGELPAG WEKALPTYTP ESPAEATRNS SQQCLNALAN VLPGLLGGSA DLASSNLSVM KQFGNFQKGT PEERNVRFGV REHGMGAICN
501: GIVLHCPGLI PYCATFFVFT DYLRPAMRIS ALCEAGVIYV MTHDSIGLGE DGPTHQPIEH LASFRAMPNI LMLRPADGTE TAAAYKIAVL NRKRPSVLAL
601: GRRDVSQLRG TSIEGVEKGG YIVTDNSSGN KPDVILIGTG SELEIAAKAA DELRKEGKAV RVVSLVCWAL FDEQSDAYKE SVLPAAVSAR VSVEAASTFG
701: WEKFVGSKGK SIGIDRFGAS APALKLYKEL GVTAEAVIAA AKSIC

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.