Factsheet for Solyc05g050970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
unclear: 26455813
extracellular: 29876421

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018062	Potato	cytosol, extracellular	94.83	98.39
Zm00001d046962_P002	Maize	cytosol	13.18	88.7
Solyc10g018300.1.1	Tomato	plastid	84.63	88.39
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	18.73	84.3
Os06t0133800-01	Rice	extracellular, plastid	72.61	82.89
TraesCSU01G063400.1	Wheat	peroxisome	66.02	80.73
TraesCS7A01G071100.2	Wheat	peroxisome	66.02	80.73
GSMUA_Achr9P20740_001	Banana	peroxisome	61.89	80.1
VIT_16s0022g01440.t01	Wine grape	plastid	75.32	79.97
HORVU7Hr1G013600.3	Barley	peroxisome	70.16	79.62
GSMUA_AchrUn_...	Banana	cytosol	44.44	79.08
Bra014473.1-P	Field mustard	plastid	74.16	78.1
CDX89074	Canola	plastid	73.9	77.82
AT3G60750.1	Thale cress	plastid	74.42	77.73
CDY48374	Canola	plastid	73.77	77.69
AT2G45290.1	Thale cress	plastid	74.29	77.6
CDY41143	Canola	plastid	73.77	77.37
Bra007555.1-P	Field mustard	plastid	73.77	77.37
CDX71785	Canola	plastid	73.64	77.13
GSMUA_Achr3P11500_001	Banana	cytosol	14.08	76.22
CDY68196	Canola	plastid	72.22	75.95
Bra003426.1-P	Field mustard	cytosol	45.22	75.76
VIT_15s0048g00370.t01	Wine grape	plastid	72.74	75.57
CDX74726	Canola	plastid	71.83	75.54
GSMUA_Achr3P11550_001	Banana	plastid	73.26	75.5
Bra004898.1-P	Field mustard	plastid	71.71	75.41
TraesCS7D01G066500.1	Wheat	plastid	71.06	73.83
GSMUA_Achr1P19800_001	Banana	plastid	62.4	71.98
CDX67840	Canola	mitochondrion	45.87	70.44
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	30.36	67.34
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	35.79	66.91
OQU80099	Sorghum	plastid	5.43	50.6
Solyc01g018020.1.1	Tomato	plastid	43.93	43.2
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	25.06	37.89

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	Gene3D:3.40.50.920
Gene3D:3.40.50.970	MapMan:3.9.2.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004802	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	InterPro:IPR009014	UniProt:K4C1C9	PFAM:PF00456	PFAM:PF02779
PFAM:PF02780	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	EnsemblPlantsGene:Solyc05g050970.2	EnsemblPlants:Solyc05g050970.2.1	InterPro:THDP-binding	TIGRFAMs:TIGR00232
InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	InterPro:Transketolase_bac-like
InterPro:Transketolase_fam	UniParc:UPI0002767421	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:61182403..61186529

Molecular Weight (calculated)

83241.6 Da

IEP (calculated)

6.800

GRAVY (calculated)

-0.199

Length

774 amino acids

Sequence
(BLAST)

001: MASSSSLTLS QAILSRSVSR HGSSSSPNSQ LSPSSISLPT FSGLKSTTAT SFRRRILPSA AGAGRHSAIR ASAAVETLQK TDNSLVEKSV NTIRFLAIDA
101: VEKANSGHPG LPMGCAPMGH ILYDEIMRYN PKNPYWFNRD RFVLSAGHGC MLQYALLHLA GYDAVREEDL KSFRQWGSKT PGHPENFETP GVEVTTGPLG
201: QGIANAVGLA LSEKHLAARF NKPDAEIVDH YTYCILGDGC QMEGISQEAA SLAGHWGLGK LIAFYDDNHI SIDGDTEIAF TEDVAARYEA LGWHVIWVKN
301: GNTGYDEIRA AIKEAKAVTD KPTLIKVTTT IGFGSPNKSN SYSVHGSALG AKEVEATRQN LGWPYEPFHV PEEVKSHWSR HVPEGAALEA GWNTKFAEYE
401: KKYPEEAADL KSIITGELPA DWEKALPTYT PESPADATRN LSQQNLNALA KVLPGFLGGS ADLASSNMTL MKMFGDFQKS TPEERNIRFG VREHGMGAIC
501: NGIALHSPGL IPYCATFFVF TDYMRAAIRI SALAESRVIY VMTHDSIGLG EDGPTHQPIE HLASFRAMPN VLMLRPADGN ETAGAYRVAI LKNKTPSILA
601: LSRQKLPQLA GTSIEGTAKG GYTISDNSSG NKPDVILIGT GSELEIAVKA ADELRKEGKA VRVVSFVSWE LFDEQSAEYK ESVLPAAVTA RVSIEAGTTF
701: GWEKIVGSKG KAIGIDRFGA SAPAGKIYKE FGITAEAVIA AAKQVGDNGG NRYQVASAVL IFSIKTITSS FSSV

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.