Factsheet for GSMUA_AchrUn_randomP27000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P11500_001	Banana	cytosol	25.98	79.02
GSMUA_Achr9P20740_001	Banana	peroxisome	89.43	65.05
CDY31467	Canola	plastid	34.71	61.38
GSMUA_Achr1P19800_001	Banana	plastid	92.18	59.76
TraesCS7A01G071100.2	Wheat	peroxisome	83.45	57.35
TraesCSU01G063400.1	Wheat	peroxisome	83.22	57.19
Os06t0133800-01	Rice	extracellular, plastid	87.13	55.9
HORVU7Hr1G013600.3	Barley	peroxisome	83.45	53.23
VIT_16s0022g01440.t01	Wine grape	plastid	87.59	52.26
GSMUA_Achr3P11550_001	Banana	plastid	89.89	52.06
KRH65318	Soybean	nucleus	87.13	51.85
Zm00001d045451_P001	Maize	plastid	86.67	51.22
OQU75756	Sorghum	plastid	87.13	51.22
KXG21442	Sorghum	plastid	86.67	51.08
Bra004898.1-P	Field mustard	plastid	83.91	49.59
CDX74726	Canola	plastid	83.91	49.59
Bra014473.1-P	Field mustard	plastid	83.68	49.52
AT2G45290.1	Thale cress	plastid	84.14	49.39
AT3G60750.1	Thale cress	plastid	84.14	49.39
CDX89074	Canola	plastid	83.45	49.39
CDY48374	Canola	plastid	83.45	49.39
CDY41143	Canola	plastid	83.68	49.32
CDY68196	Canola	plastid	83.45	49.32
Bra007555.1-P	Field mustard	plastid	83.45	49.19
VIT_15s0048g00370.t01	Wine grape	plastid	84.14	49.13
CDX71785	Canola	plastid	83.45	49.12
TraesCS7D01G066500.1	Wheat	plastid	83.45	48.72
KRG93011	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	81.15	47.7
KRH36260	Soybean	endoplasmic reticulum, nucleus, plastid	80.92	47.44
PGSC0003DMT400056799	Potato	cytosol, plastid	80.46	47.23
Solyc10g018300.1.1	Tomato	plastid	80.23	47.1
EER89132	Sorghum	plastid	79.31	46.12
PGSC0003DMT400018062	Potato	cytosol, extracellular	78.85	45.98
Solyc05g050970.2.1	Tomato	plastid	79.08	44.44
Bra003426.1-P	Field mustard	cytosol	43.22	40.69
CDX67840	Canola	mitochondrion	42.53	36.71
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	25.98	32.38
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	30.8	32.37
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	14.94	32.02
GSMUA_Achr11P...	Banana	cytosol	14.02	29.9
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	20.46	17.38
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	3.91	9.88

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP27000_001	EnsemblPlants:GSMUA_AchrUn_randomT27000_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG27000_001	Gene3D:3.40.50.970	InterPro:THDP-binding	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_N	InterPro:Transketolase_fam	KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7
PANTHER:PTHR43522	PANTHER:PTHR43522:SF3	PFAM:PF00456	PFAM:PF02779	SEG:seg	SUPFAM:SSF52518
UniParc:UPI0002958E8D	UniProt:M0UCQ8	MapMan:1.2.7	MapMan:3.9.2.3	:	:

Description

Transketolase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG27000_001]

Coordinates

chrchrUn_random:+:132114152..132116890

Molecular Weight (calculated)

47994.9 Da

IEP (calculated)

6.114

GRAVY (calculated)

-0.228

Length

435 amino acids

Sequence
(BLAST)

001: MGHILYDDVM RYNPKNPYWF NRDRFVLSAG HGCMLQYALL HLAGYDSVKY NFSFDKINLI EDIQQFRQWG SRTPGHPENF ETPGVEVTTG PLGQGVANAV
101: GLALAERHLA ARFNKPDNEI VDHYTYVILG DGCQMEGIAN EACSLAGHWG LGKLIAFYDD NHISIDGDTE IAFTEDVSAR FEALGWHTIW VKNGNTGYTD
201: IRAAIKDAKA IKDKPTLIKV TTTIGYGSPN KANSYSVHGS ALGAKEVDAT RQNLGWPYEP FHVPEDVKSH WSRHVPEGAA LEAEWNAKFA VYENKYKEDA
301: AELKAIISGE FPAGWEKALP IYTVESPADA TRNLSQQNLN ALVKVLPGLL GGSADLASSN MTLLKMFGDF QKGTPKEQNV RFGVREHGMG AICNGIALHS
401: PGLLPYCATF FVFTDYMRAA MRISALCEAG VIYVM

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.