CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36260	Soybean	endoplasmic reticulum, nucleus, plastid	94.32	94.07
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	19.59	84.3
Os06t0133800-01	Rice	extracellular, plastid	76.35	83.33
VIT_16s0022g01440.t01	Wine grape	plastid	80.41	81.62
GSMUA_AchrUn_...	Banana	cytosol	47.7	81.15
KRH65318	Soybean	nucleus	80.0	80.98
GSMUA_Achr9P20740_001	Banana	peroxisome	64.86	80.27
TraesCSU01G063400.1	Wheat	peroxisome	68.65	80.25
TraesCS7A01G071100.2	Wheat	peroxisome	68.65	80.25
HORVU7Hr1G013600.3	Barley	peroxisome	72.84	79.03
GSMUA_Achr3P11500_001	Banana	cytosol	15.27	79.02
GSMUA_Achr3P11550_001	Banana	plastid	78.24	77.1
GSMUA_Achr1P19800_001	Banana	plastid	67.03	73.92
TraesCS7D01G066500.1	Wheat	plastid	73.92	73.42
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	37.3	66.67
KRH29475	Soybean	cytosol	36.08	66.58
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	28.92	41.8

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	EntrezGene:100805786
Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:3.9.2.3	UniProt:A0A0R4J653	EMBL:ACUP02012778	EnsemblPlantsGene:GLYMA_20G243500
GO:GO:0003674	GO:GO:0003824	GO:GO:0004802	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740
InterPro:IPR009014	EnsemblPlants:KRG93011	ProteinID:KRG93011	ProteinID:KRG93011.1	PFAM:PF00456	PFAM:PF02779
PFAM:PF02780	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	MetaCyc:PWY-1861
MetaCyc:PWY-5723	MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-6901	MetaCyc:PWY-7560	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00232	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	UniParc:UPI00019D348F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:47387481..47391471

Molecular Weight (calculated)

80082.9 Da

IEP (calculated)

6.441

GRAVY (calculated)

-0.227

Length

740 amino acids

Sequence
(BLAST)

001: MASTSSLHLS QALLARAVYL HGSSSDRVSL SFPSFSGLKS HSPCKAAATS SRRRGACAST SVVRAAAVET LDQTTEVSLV EKSVNTIRFL AIDAVEKANS
101: GHPGLPMGCA PMGHILYDEV MRYNPKNPTW FNRDRFILSA GHGCMLQYAL LHLAGYDSVL EEDLKEFRQW GSRTPGHPEN FETVGIEVTT GPLGQGIANA
201: VGLALAEKHL AARFNKPDNE IVDHYTYVIL GDGCQMEGIS NEACSLAGHW GLGKLIALYD DNHISIDGDT EIAFTENVDQ RFEALGWHVI WVKNGNTGYD
301: EIRAAIKEAK AVKDKPTMIK VTTTIGFGSP NKANSYSVHG SALGTKEVDA TRKNLGWPYE PFHVPEDVKK HWSRHTPEGA KLEAEWNAKF AEYEKKYSEE
401: AAELKAIITG ELPAGWEKAL PTYTPESPAD ATRNLSQQNL NALVKVLPGL LGGSADLASS NMTLLKSYGD FQKNTPEERN VRFGVREHGM GAICNGIALH
501: SPGFIPYCAT FFVFTDYMRA AIRISALCEA GVIYVMTHDS IGLGEDGPTH QPIEHLASFR AMPNTLMLRP ADGNETAGSY KVAVVNRKRP SILALSRQKL
601: TQLPGTSIEG VEKGGYIISD NSSGNKPDVI LIGTGSELEI AAAAAEDLRK EGKAVRVVSF VSWELFDEQS DEYKESVLPA SVTVRVSIEA GSTFGWQKIV
701: GSQGKAIGID RFGASAPAGK IYKEFGITKE AVIAAAKELS

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.