Factsheet for GSMUA_Achr3P11490_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
plastid 3
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	34.54	83.14
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	56.76	67.34
Bra003426.1-P	Field mustard	cytosol	61.59	55.19
CDX67840	Canola	mitochondrion	61.84	50.79
TraesCSU01G063400.1	Wheat	peroxisome	70.77	46.29
TraesCS7A01G071100.2	Wheat	peroxisome	70.77	46.29
GSMUA_Achr3P11550_001	Banana	plastid	81.64	45.01
GSMUA_Achr9P20740_001	Banana	peroxisome	64.25	44.48
Os06t0133800-01	Rice	extracellular, plastid	71.26	43.51
HORVU7Hr1G013600.3	Barley	peroxisome	70.53	42.82
KRH65318	Soybean	nucleus	75.36	42.68
VIT_16s0022g01440.t01	Wine grape	plastid	73.43	41.7
Zm00001d045451_P001	Maize	plastid	72.95	41.03
OQU75756	Sorghum	plastid	72.22	40.41
KXG21442	Sorghum	plastid	70.53	39.57
TraesCS7D01G066500.1	Wheat	plastid	70.53	39.19
AT2G45290.1	Thale cress	plastid	69.57	38.87
CDY68196	Canola	plastid	68.36	38.45
CDX89074	Canola	plastid	68.12	38.37
Bra014473.1-P	Field mustard	plastid	68.12	38.37
CDY41143	Canola	plastid	68.36	38.35
CDY48374	Canola	plastid	67.87	38.23
CDX71785	Canola	plastid	68.12	38.16
Bra007555.1-P	Field mustard	plastid	67.87	38.08
CDX74726	Canola	plastid	67.63	38.04
VIT_15s0048g00370.t01	Wine grape	plastid	68.36	37.99
Bra004898.1-P	Field mustard	plastid	67.39	37.91
AT3G60750.1	Thale cress	plastid	67.39	37.65
KRH36260	Soybean	endoplasmic reticulum, nucleus, plastid	66.91	37.33
KRG93011	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	66.67	37.3
PGSC0003DMT400018062	Potato	cytosol, extracellular	66.67	37.0
PGSC0003DMT400056799	Potato	cytosol, plastid	65.22	36.44
Solyc10g018300.1.1	Tomato	plastid	64.98	36.3
EER89132	Sorghum	plastid	65.46	36.23
Solyc05g050970.2.1	Tomato	plastid	66.91	35.79
GSMUA_Achr11P...	Banana	cytosol	17.15	34.8
GSMUA_Achr1P19800_001	Banana	plastid	53.14	32.79
GSMUA_AchrUn_...	Banana	cytosol	32.37	30.8
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	34.3	27.73
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	2.42	4.93
CDY31467	Canola	plastid	2.42	4.07
GSMUA_Achr3P11500_001	Banana	cytosol	0.24	0.7

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:3.9.2.3	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSMUA_Achr3G11490_001	EnsemblPlants:GSMUA_Achr3P11490_001	EnsemblPlants:GSMUA_Achr3T11490_001
InterPro:IPR009014	UniProt:M0SDR6	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7
SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_C	InterPro:Transketolase_fam	UniParc:UPI00029611A8	SEG:seg	:	:

Description

Transketolase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G11490_001]

Coordinates

chr3:-:8521854..8526285

Molecular Weight (calculated)

46007.0 Da

IEP (calculated)

7.003

GRAVY (calculated)

-0.301

Length

414 amino acids

Sequence
(BLAST)

001: MNHQTRQTHT AYMEVHWVTR KLMQLGKVSN GHMNLSMKRP ETFHWCHVPE GAALEAEWNA RFAEYEEKYK EDAAELKAII SEELPTRWEK ALPKITSLLL
101: FQTYTPESPA DATRNLSQQN LNALAKVHLA SSNMTLLKMF GNFQTGTPDE RNVRFGVKEH GMGAICNGIA LHSPGLLPYC ATFFVFTDYM RDESCHKDLD
201: LSSSTRVIYV MTHDSIGLGE DGPTHQPIEN LISFRAMPNI LMLRHADGNE TAGAYKVAVL NRKRPSVLAL SRQKLPQLPG TSIEDVEKGR FTISDNSTGN
301: KLDVILIGTG SELEIAAKAA DELRKEGKTV RVVSLVFWEL FDEQPDEYKE SVFPAAVTAR ISIEAGVTLG WEKYVGSKGK AIGIDRFGAS ARAGRIYKEF
401: GITAESIVAA AKSL

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.