Factsheet for PGSC0003DMT400056799

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g018300.1.1	Tomato	plastid	98.79	98.79
Zm00001d046962_P002	Maize	cytosol	13.9	89.57
PGSC0003DMT400018062	Potato	cytosol, extracellular	88.53	87.94
Os06t0133800-01	Rice	extracellular, plastid	75.84	82.89
TraesCSU01G063400.1	Wheat	peroxisome	70.04	81.99
TraesCS7A01G071100.2	Wheat	peroxisome	69.77	81.67
HORVU7Hr1G013600.3	Barley	peroxisome	74.09	80.5
GSMUA_AchrUn_...	Banana	cytosol	47.23	80.46
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	18.62	80.23
GSMUA_Achr9P20740_001	Banana	peroxisome	64.24	79.6
VIT_16s0022g01440.t01	Wine grape	plastid	78.14	79.42
Bra014473.1-P	Field mustard	plastid	78.54	79.18
AT3G60750.1	Thale cress	plastid	79.08	79.08
CDY41143	Canola	plastid	78.54	78.86
Bra007555.1-P	Field mustard	plastid	78.54	78.86
CDX89074	Canola	plastid	78.14	78.78
CDY48374	Canola	plastid	77.87	78.5
AT2G45290.1	Thale cress	plastid	78.41	78.41
CDX71785	Canola	plastid	78.14	78.35
GSMUA_Achr3P11500_001	Banana	cytosol	15.11	78.32
Bra003426.1-P	Field mustard	cytosol	48.72	78.14
CDY68196	Canola	plastid	76.65	77.17
CDX74726	Canola	plastid	76.52	77.04
Bra004898.1-P	Field mustard	plastid	76.38	76.9
VIT_15s0048g00370.t01	Wine grape	plastid	76.25	75.84
GSMUA_Achr3P11550_001	Banana	plastid	76.25	75.23
TraesCS7D01G066500.1	Wheat	plastid	75.3	74.9
GSMUA_Achr1P19800_001	Banana	plastid	65.72	72.58
CDX67840	Canola	mitochondrion	48.99	72.02
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	32.93	69.91
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	36.44	65.22
PGSC0003DMT400038242	Potato	plastid	43.86	50.78
OQU80099	Sorghum	plastid	5.53	49.4
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	26.59	38.48

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	Gene3D:3.40.50.920
Gene3D:3.40.50.970	MapMan:3.9.2.3	ProteinID:CAA90427	ProteinID:CAA90427.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004802	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016740
GO:GO:0019253	GO:GO:0046872	InterPro:IPR009014	UniProt:M1BZW7	PFAM:PF00456	PFAM:PF02779
PFAM:PF02780	EnsemblPlantsGene:PGSC0003DMG400022088	PGSC:PGSC0003DMG400022088	EnsemblPlants:PGSC0003DMT400056799	ScanProsite:PS00801	ScanProsite:PS00802
PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
TIGRFAMs:TIGR00232	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N
InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	UniParc:UPI0002955947	EMBL:Z50099	SEG:seg	:

Description

Transketolase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400022088]

Coordinates

chr10:-:20333032..20336415

Molecular Weight (calculated)

79982.7 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.206

Length

741 amino acids

Sequence
(BLAST)

001: MASSSSLTLS QAIFSPSLPR HGSSSSSSPS LSFSTFSGLK STPFTSSHRR ILPSTTVTKQ QFSVRASAAV ETLEKTDAAI VEKSVNTIRF LAIDAVEKAN
101: SGHPGLPMGC APMGHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV QEDDLKSFRQ WGSRIPGHPE NFETPGVEVT TGPLGQGIAN
201: AVGLAVAEKH LAARFNKPDA EIVDHYTYVI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTEDVS ARFESLGWHV IWVKNGNTGY
301: DEIRAAIKEA KAVKDKPTMI KVTTTIGFGS PNKANSYSVH GSALGAKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALETEWNAK FAEYEKKYAE
401: EAADLKSIIT GELPAGWEKA LPTYTPESPA DATRNLSQQN LNALAKVLPG FLGGSADLAS SNMTLLKMFG DFQKNTPEER NLRFGVREHG MGAICNGIAL
501: HSLGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLASF RAMPNILMFR PADGNETAGA YKVAVLKRKT PSILALSRQK
601: LPQLAGTSIE GAAKGGYIVS DNSSGNKPDV ILIGTGSELE IAVKAAEELK KEGKTVRVVS FVCWELYDEQ SAEYKESVLP SSVTARVSIE AGSTFGWQKF
701: VGDKGKAIGI DGFGASAPAD KIYKEFGITA EAVVAAAKQV S

Best Arabidopsis Sequence Match ( AT3G60750.1 )
(BLAST)

001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F

Arabidopsis Description

TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.