CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60750.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31467	Canola	plastid	48.19	16.26
KXG21442	Sorghum	plastid	51.81	5.83
OQU75756	Sorghum	plastid	51.81	5.81
AT3G60750.1	Thale cress	plastid	51.81	5.8
Bra004898.1-P	Field mustard	plastid	50.6	5.71
AT2G45290.1	Thale cress	plastid	50.6	5.67
VIT_15s0048g00370.t01	Wine grape	plastid	50.6	5.64
PGSC0003DMT400018062	Potato	cytosol, extracellular	50.6	5.63
VIT_16s0022g01440.t01	Wine grape	plastid	49.4	5.62
Bra014473.1-P	Field mustard	plastid	49.4	5.58
Bra007555.1-P	Field mustard	plastid	49.4	5.56
PGSC0003DMT400056799	Potato	cytosol, plastid	49.4	5.53
Solyc10g018300.1.1	Tomato	plastid	49.4	5.53
EES10537	Sorghum	plastid	48.19	5.51
Solyc05g050970.2.1	Tomato	plastid	50.6	5.43
EER89132	Sorghum	plastid	42.17	4.68
Zm00001d046962_P002	Maize	cytosol	6.02	4.35
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	12.05	1.95
Bra003426.1-P	Field mustard	cytosol	4.82	0.87

Protein Annotations

EnsemblPlants:OQU80099	EnsemblPlantsGene:SORBI_3007G078400	Gene3D:3.40.50.970	InterPro:THDP-binding	InterPro:Transketolase_N	InterPro:Transketolase_fam
KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7
PFAM:PF00456	ProteinID:KXG24727.1	ProteinID:OQU80098.1	ProteinID:OQU80099	ProteinID:OQU80099.1	SUPFAM:SSF52518
UniParc:UPI00081AC6FA	UniProt:A0A1B6PGI2	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:9189252..9192025

Molecular Weight (calculated)

9184.9 Da

IEP (calculated)

4.535

GRAVY (calculated)

-0.069

Length

83 amino acids

Sequence
(BLAST)

1: MRFSTTSYQQ LMPSSLTLLQ EKDLEQFRQW ASSTAGYPEN FETLGVKITS GSLGPGIANA DGLALDETTL INWIFIKCTL THV

Best Arabidopsis Sequence Match ( AT3G60750.1 )
(BLAST)

001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F

Arabidopsis Description

TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.