Factsheet for Bra003426.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60750.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	28.57	76.74
CDX67840	Canola	mitochondrion	83.55	76.59
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	55.19	61.59
Bra014473.1-P	Field mustard	plastid	87.66	55.1
Bra007555.1-P	Field mustard	plastid	87.45	54.74
TraesCSU01G063400.1	Wheat	peroxisome	74.46	54.34
TraesCS7A01G071100.2	Wheat	peroxisome	74.24	54.19
AT3G60750.1	Thale cress	plastid	86.58	53.98
Os06t0133800-01	Rice	extracellular, plastid	74.89	51.03
HORVU7Hr1G013600.3	Barley	peroxisome	74.68	50.59
GSMUA_Achr9P20740_001	Banana	peroxisome	64.94	50.17
Bra004898.1-P	Field mustard	plastid	78.14	49.05
Solyc10g018300.1.1	Tomato	plastid	78.36	48.85
VIT_16s0022g01440.t01	Wine grape	plastid	77.06	48.83
PGSC0003DMT400056799	Potato	cytosol, plastid	78.14	48.72
Zm00001d046962_P002	Maize	cytosol	11.69	46.96
PGSC0003DMT400018062	Potato	cytosol, extracellular	75.54	46.78
TraesCS7D01G066500.1	Wheat	plastid	74.24	46.04
GSMUA_Achr3P11550_001	Banana	plastid	74.68	45.94
Solyc05g050970.2.1	Tomato	plastid	75.76	45.22
VIT_15s0048g00370.t01	Wine grape	plastid	72.73	45.1
GSMUA_AchrUn_...	Banana	cytosol	40.69	43.22
GSMUA_Achr1P19800_001	Banana	plastid	58.01	39.94
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	36.8	33.2
GSMUA_Achr3P11500_001	Banana	cytosol	3.46	11.19
OQU80099	Sorghum	plastid	0.87	4.82

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970
MapMan:3.9.2.3	EnsemblPlantsGene:Bra003426	EnsemblPlants:Bra003426.1	EnsemblPlants:Bra003426.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:IPR009014	UniProt:M4CGU3	PFAM:PF00456	PFAM:PF02779
PFAM:PF02780	ScanProsite:PS00802	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C
InterPro:Transketolase_N	InterPro:Transketolase_fam	UniParc:UPI00025417F5	SEG:seg	:	:

Description

AT3G60750 (E=4e-140) | transketolase, putative

Coordinates

chrA07:+:13146715..13149975

Molecular Weight (calculated)

49805.3 Da

IEP (calculated)

5.103

GRAVY (calculated)

-0.110

Length

462 amino acids

Sequence
(BLAST)

001: MLNQESYVIL GDGCQIKGIS NEAASLAGHW GLGKLIAFYD DSRISIDGDT EMPLLRTLTS VSKLLDGMLS VTTTIVYGSP NKANSYSVYG AALGEKEVEA
101: TRNNLGWPYE PFQVPDEVKG HWSRHTPKGS ALESNWNATL AYEKKYPEEA AELKCELPAG WEKALPTYTP ESPGDATRNL SQQCQQCLNA LAKVVPGFLE
201: INLRFGVREH GMGAICNSIA LHSPGLIPYC ATFFVFTDYM RGAMRISALS ESGVIYVMTH DSIGLGEDGP THQPIEHIAS FRAMPNTLMF CPADGNETAG
301: AYKIVVTKRK TPSILALSRQ KLPELPGTSI EGVEKGGYTI SDNSSGNKPD VILIGTGSEL EIAAQAAEVL RKEGKTVRVV SFVCWELFEE QTDEYKESVL
401: PSGVTARVSI EAASTFGWGK IVGGRGKSIG INSFGASAPA PLLYKEFGII VEAVVDAAKS LF

Best Arabidopsis Sequence Match ( AT3G60750.2 )
(BLAST)

001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEDLKQFRQW GSKTPGHPEN FETPGIEVTT GPLGQGIANA
201: VGLALAEKHL AARFNKPDAE VVDHYTYAIL GDGCQMEGIS NEACSLAGHW GLGKLIAFYD DNHISIDGDT EIAFTENVDQ RFEALGWHVI WVKNGNTGYD
301: EIRAAIKEAK TVTDKPTLIK VTTTIGYGSP NKANSYSVHG AALGEKEVEA TRNNLGWPYE PFQVPDDVKS HWSRHTPEGA TLESDWSAKF AAYEKKYPEE
401: ASELKSIITG ELPAGWEKAL PTYTPESPGD ATRNLSQQCL NALAKVVPGF LGGSADLASS NMTLLKAFGD FQKATPEERN LRFGVREHGM GAICNGIALH
501: SPGLIPYCAT FFVFTDYMRG AMRISALSEA GVIYVMTHDS IGLGEDGPTH QPIEHIASFR AMPNTLMFRP ADGNETAGAY KIAVTKRKTP SILALSRQKL
601: PHLPGTSIEG VEKGGYTISD DSSGNKPDVI LIGTGSELEI AAQAAEVLRK DGKTVRVVSF VCWELFDEQS DEYKESVLPS DVSARVSIEA ASTFGWGKIV
701: GGKGKSIGIN SFGASAPAPL LYKEFGITVE AVVDAAKSFF

Arabidopsis Description

TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.