Factsheet for TraesCSU01G063400.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytoskeleton, cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60750.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G60750.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G60750.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G60750.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G60750.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G60750.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G071100.2	Wheat	peroxisome	99.37	99.37
HORVU7Hr1G013600.3	Barley	peroxisome	99.68	92.52
Os06t0133800-01	Rice	extracellular, plastid	91.15	85.1
TraesCS7D01G066500.1	Wheat	plastid	99.68	84.7
GSMUA_AchrUn_...	Banana	cytosol	57.19	83.22
GSMUA_Achr9P20740_001	Banana	peroxisome	77.09	81.61
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	21.8	80.23
Zm00001d045451_P001	Maize	plastid	89.89	77.31
OQU75756	Sorghum	plastid	90.36	77.3
KXG21442	Sorghum	plastid	89.89	77.1
Bra003426.1-P	Field mustard	cytosol	54.34	74.46
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	40.76	73.93
VIT_16s0022g01440.t01	Wine grape	plastid	84.99	73.8
Bra014473.1-P	Field mustard	plastid	84.36	72.65
AT3G60750.1	Thale cress	plastid	84.99	72.6
CDX89074	Canola	plastid	84.2	72.52
CDY41143	Canola	plastid	84.52	72.49
KRH65318	Soybean	nucleus	83.41	72.23
CDY48374	Canola	plastid	83.73	72.11
Bra007555.1-P	Field mustard	plastid	84.04	72.09
CDX71785	Canola	plastid	84.04	71.99
GSMUA_Achr3P11550_001	Banana	plastid	85.31	71.9
CDY68196	Canola	plastid	83.25	71.6
AT2G45290.1	Thale cress	plastid	83.73	71.53
CDX74726	Canola	plastid	82.62	71.06
Bra004898.1-P	Field mustard	plastid	82.46	70.92
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	46.29	70.77
Solyc10g018300.1.1	Tomato	plastid	82.46	70.45
PGSC0003DMT400056799	Potato	cytosol, plastid	81.99	70.04
CDX67840	Canola	mitochondrion	54.66	68.65
KRG93011	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	80.25	68.65
PGSC0003DMT400018062	Potato	cytosol, extracellular	80.88	68.63
VIT_15s0048g00370.t01	Wine grape	plastid	80.57	68.46
KRH36260	Soybean	endoplasmic reticulum, nucleus, plastid	80.09	68.33
GSMUA_Achr1P19800_001	Banana	plastid	70.46	66.47
Solyc05g050970.2.1	Tomato	plastid	80.73	66.02
CDY31467	Canola	plastid	23.7	60.98
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	29.23	36.13

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	Gene3D:3.40.50.920
Gene3D:3.40.50.970	MapMan:3.9.2.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004802	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	InterPro:IPR009014	PFAM:PF00456	PFAM:PF02779	PFAM:PF02780
PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
TIGRFAMs:TIGR00232	EnsemblPlantsGene:TraesCSU01G063400	EnsemblPlants:TraesCSU01G063400.1	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
InterPro:Transketolase_N	InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	TIGR:cd02012	TIGR:cd07033	:

Description

No Description!

Coordinates

chrUn:-:49995598..49998392

Molecular Weight (calculated)

68902.7 Da

IEP (calculated)

5.382

GRAVY (calculated)

-0.233

Length

633 amino acids

Sequence
(BLAST)

001: MGCAPMGHIL YDEVMRYNPK NPYWFNRDRF VLSAGHGCML QYALLHLAGY DAVKEDDLKQ FRQWGSSTPG HPENFETPGV EVTTGPLGQG IANAVGLALA
101: EKHLAARFNK PDSEIVDHYT YCIVGDGCNM EGILTEACSL AGHWGLGKLI VFYDDNHISI DGDTEIAFTE DVSGRFEALG WHTLWVKNGN DGYDEIRKAI
201: QEAKSVTDKP TMIKVTTTIG FGSPNKANSY AVHGAALGTS EVEATRANLG WPYEPFFVPE DVKSHWSRHI PQGAALEADW DAKFAQYEQK YPEDAATLKS
301: IITGELPAGW ADALPQYTTE SPADATRNLS QQCLNALAKV VPGLIGGSAD LASSNMTLLK MFGDFQKDTP EERNVRFGVR EHGMGAICNG IALHTPGLIP
401: YCATFFVFTD YMRGAMRISA LSEAGVIYVM THDSIGLGED GPTHQPIEHL VSFRAMPNML MFRPADGKET AGAYKVAVLN RKRPSILALS RQKLPHLPGT
501: SIEGVAKGGY TISDNSTGNK PDYIIMSTGS EVEIAVKAAE ELTKEGKTVR VVSFVCWELF DEQSDEYKES VLPEAVTARI SIEAGSTLGW QKYVGSKGKT
601: IGIDKFGASA PAPKIYKEYG ITAENVIAAA KSL

Best Arabidopsis Sequence Match ( AT3G60750.1 )
(BLAST)

001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F

Arabidopsis Description

TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.