CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 25724908
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	51.85	87.13
VIT_16s0022g01440.t01	Wine grape	plastid	85.5	85.73
GSMUA_Achr9P20740_001	Banana	peroxisome	69.9	85.45
Os06t0133800-01	Rice	extracellular, plastid	79.07	85.25
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	19.7	83.72
TraesCSU01G063400.1	Wheat	peroxisome	72.23	83.41
TraesCS7A01G071100.2	Wheat	peroxisome	72.23	83.41
HORVU7Hr1G013600.3	Barley	peroxisome	76.33	81.82
GSMUA_Achr3P11550_001	Banana	plastid	82.76	80.56
KRG93011	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	80.98	80.0
KRH36260	Soybean	endoplasmic reticulum, nucleus, plastid	81.12	79.92
GSMUA_Achr3P11500_001	Banana	cytosol	15.32	78.32
TraesCS7D01G066500.1	Wheat	plastid	77.84	76.38
GSMUA_Achr1P19800_001	Banana	plastid	69.9	76.16
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	42.68	75.36
KRH29475	Soybean	cytosol	37.21	67.83
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	27.5	39.26

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	EntrezGene:100818028
Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:3.9.2.3	UniProt:A0A0R4J2U8	EMBL:ACUP02001328	ncoils:Coil
EnsemblPlantsGene:GLYMA_03G027500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004802	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	InterPro:IPR009014	EnsemblPlants:KRH65318	ProteinID:KRH65318	ProteinID:KRH65318.1	PFAM:PF00456
PFAM:PF02779	PFAM:PF02780	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7
MetaCyc:PWY-1861	MetaCyc:PWY-5723	MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-6901	MetaCyc:PWY-7560
SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00232	InterPro:Transketo_C/PFOR_II
InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	InterPro:Transketolase_bac-like	InterPro:Transketolase_fam
UniParc:UPI00019D3490	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:3020586..3024713

Molecular Weight (calculated)

78910.7 Da

IEP (calculated)

6.863

GRAVY (calculated)

-0.242

Length

731 amino acids

Sequence
(BLAST)

001: MASSTSSISL SQALLRPTTT SLPSSSSSLR LTPTLRPTPP ALSLRRRLTT SIRAAASVKT VEKATADAAL VEKSVNTIRF LAIDAVEKAN SGHPGLPMGC
101: APMGHVLYDE TMKYNPKNPF WFNRDRFVLS AGHGCMLQYA LLHLAGFDSV KEEDLREFRQ WGSRTPGHPE NFETPGIEVT TGPLGQGIAN AVGLALAEKH
201: LAARYNKPDN EIVDHYTYAI LGDGCQMEGI ANEACSLAGH WGLGKLIAFY DDNHISIDGN TEIAFTESVD SRFEGLGWHV IWVKNGNNGY DDIRAAIKEA
301: KAVKDKPTLI KVTTTIGYGS PNKANSYSVH GSALGAKEVD ATRQNLGWSH EPFHVPEDVK KHWSRHTPEG AALEAEWNAK FAEYEKKYKE EAAELKSIIN
401: GEFPAGWEKA LPTYTPESPA DATRNLSQTN LNALAKVLPG LLGGSADLAS SNMTLLKMFG DFQKDTPAER NVRFGVREHG MGAICNGIAL HSPGLIPYCA
501: TFFVFTDYMR GAIRLSALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLASF RAMPNILMLR PADGNETAGA YKVAVLNRKR PSILALSRQK LPQLPGTSIE
601: GVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAKAADDLR KEGKAVRVVS LVSWELFDEQ SEAYKESVFP AAVSARVSIE AGSTFGWEKI VGAKGKAIGI
701: DRFGASAPAG RIYKEFGITK EAVVAAAKEL I

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.