CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93011	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	94.07	94.32
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	19.68	84.88
Os06t0133800-01	Rice	extracellular, plastid	75.47	82.6
VIT_16s0022g01440.t01	Wine grape	plastid	80.46	81.89
KRH65318	Soybean	nucleus	79.92	81.12
GSMUA_AchrUn_...	Banana	cytosol	47.44	80.92
TraesCSU01G063400.1	Wheat	peroxisome	68.33	80.09
TraesCS7A01G071100.2	Wheat	peroxisome	68.19	79.94
GSMUA_Achr9P20740_001	Banana	peroxisome	64.42	79.93
HORVU7Hr1G013600.3	Barley	peroxisome	72.37	78.74
GSMUA_Achr3P11500_001	Banana	cytosol	14.96	77.62
GSMUA_Achr3P11550_001	Banana	plastid	77.63	76.7
TraesCS7D01G066500.1	Wheat	plastid	73.85	73.56
GSMUA_Achr1P19800_001	Banana	plastid	66.04	73.03
KRH29475	Soybean	cytosol	36.25	67.08
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	37.33	66.91
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	29.11	42.19

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	EntrezGene:100781676
Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:3.9.2.3	EMBL:ACUP02006723	EnsemblPlantsGene:GLYMA_10G293500	GO:GO:0003674
GO:GO:0003824	GO:GO:0004802	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	UniProt:I1LFG4
InterPro:IPR009014	EnsemblPlants:KRH36260	ProteinID:KRH36260	ProteinID:KRH36260.1	PFAM:PF00456	PFAM:PF02779
PFAM:PF02780	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	MetaCyc:PWY-1861
MetaCyc:PWY-5723	MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-6901	MetaCyc:PWY-7560	SMART:SM00861
SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00232	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	UniParc:UPI000233D69B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:51103542..51107669

Molecular Weight (calculated)

80231.0 Da

IEP (calculated)

6.549

GRAVY (calculated)

-0.240

Length

742 amino acids

Sequence
(BLAST)

001: MASSSSLHLS QALLARAVYL HGSSSSDRVS LSFPSFSGLK SHSTCKAAAA TSSRRRGACP STNVVRAAAV ETLDQTTEVS LVEKSVNTIR FLAIDAVEKA
101: NSGHPGLPMG CAPMGHILYD EIMRYNPKNP AWFNRDRFVL SAGHGCMLQY ALLHLAGYDT VQEQDLKEFR QWGSRTPGHP ENFETLGVEV TTGPLGQGIA
201: NAVGLALAEK HLAARFNKPD NEIVDHYTYV ILGDGCQMEG ISNEACSLAG HWGLGKLIAL YDDNHISIDG DTEIAFTENV DQRFEALGWH VIWVKNGNTG
301: YDEIRAAIKE AKAVKDKPTL IKVTTTIGFG SPNKANSYSV HGSALGAKEV DATRKNLGWP YEPFHVPEDV KKHWSRHTPE GAKLEAEWNA KFVEYEKQYS
401: EEAAELKAII TGELPAGWEK ALPTYTPESP ADATRNLSQQ NLNALVKVLP GLLGGSADLA SSNMTLLKSY GDFQKNTPEE RNVRFGVREH GMGAICNGIA
501: LHSPGFIPYC ATFFVFTDYM RAAIRISALC EAGVIYVMTH DSIGLGEDGP THQPIEHLAS FRAMPNTLML RPADGNETAG SYKVAVVNRK RPSILALSRQ
601: KLTQLPGTSI EGVEKGGYTI SDNSSGNKPD VILIGTGSEL EIAAAAAEDL RKEGKAVRVV SFVSWELFDE QSDEYKESVL PASVTARVSI EAGSTFGWHK
701: IVGSKGKAIG IDRFGASAPA GKIYKEFGIT KEAVIAAAKE LS

Best Arabidopsis Sequence Match ( AT3G60750.1 )
(BLAST)

001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F

Arabidopsis Description

TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.