Factsheet for TraesCS7D01G066500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16481623
plastid: 16595579
plastid: 18419817
plastid: 22160430
golgi: 23128297
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms PMID: 16481623 doi

Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan

Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60750.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G60750.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G60750.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G60750.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G60750.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G60750.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G063400.1	Wheat	peroxisome	84.7	99.68
TraesCS7A01G071100.2	Wheat	peroxisome	84.7	99.68
HORVU7Hr1G013600.3	Barley	peroxisome	90.47	98.83
Os06t0133800-01	Rice	extracellular, plastid	82.15	90.27
OQU75756	Sorghum	plastid	86.04	86.62
Zm00001d045451_P001	Maize	plastid	83.89	84.92
KXG21442	Sorghum	plastid	83.49	84.28
GSMUA_AchrUn_...	Banana	cytosol	48.72	83.45
GSMUA_Achr9P20740_001	Banana	peroxisome	65.5	81.61
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	18.39	79.65
AT3G60750.1	Thale cress	plastid	78.12	78.54
Bra014473.1-P	Field mustard	plastid	77.45	78.5
CDX89074	Canola	plastid	77.32	78.37
VIT_16s0022g01440.t01	Wine grape	plastid	76.64	78.33
CDY41143	Canola	plastid	77.58	78.32
CDY48374	Canola	plastid	76.91	77.96
CDX71785	Canola	plastid	77.32	77.94
Bra007555.1-P	Field mustard	plastid	77.18	77.91
KRH65318	Soybean	nucleus	76.38	77.84
GSMUA_Achr3P11550_001	Banana	plastid	77.99	77.36
AT2G45290.1	Thale cress	plastid	76.38	76.79
CDY68196	Canola	plastid	75.44	76.36
Solyc10g018300.1.1	Tomato	plastid	75.17	75.57
CDX74726	Canola	plastid	74.5	75.41
PGSC0003DMT400056799	Potato	cytosol, plastid	74.9	75.3
Bra004898.1-P	Field mustard	plastid	74.36	75.27
Bra003426.1-P	Field mustard	cytosol	46.04	74.24
PGSC0003DMT400018062	Potato	cytosol, extracellular	74.09	73.99
KRG93011	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	73.42	73.92
KRH36260	Soybean	endoplasmic reticulum, nucleus, plastid	73.56	73.85
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	34.5	73.64
VIT_15s0048g00370.t01	Wine grape	plastid	73.56	73.56
GSMUA_Achr1P19800_001	Banana	plastid	65.37	72.58
TraesCS2D01G073900.1	Wheat	plastid	68.05	71.61
Solyc05g050970.2.1	Tomato	plastid	73.83	71.06
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	39.19	70.53
CDX67840	Canola	mitochondrion	46.44	68.65
CDY31467	Canola	plastid	20.67	62.6
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	24.83	36.13

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	Gene3D:3.40.50.920
Gene3D:3.40.50.970	MapMan:3.9.2.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004802	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	InterPro:IPR009014	PFAM:PF00456	PFAM:PF02779	PFAM:PF02780
ScanProsite:PS00801	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
InterPro:THDP-binding	TIGRFAMs:TIGR00232	EnsemblPlantsGene:TraesCS7D01G066500	EnsemblPlants:TraesCS7D01G066500.1	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd
InterPro:Transketolase_C	InterPro:Transketolase_N	InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	TIGR:cd02012	TIGR:cd07033
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:37285606..37288702

Molecular Weight (calculated)

80059.9 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.183

Length

745 amino acids

Sequence
(BLAST)

001: MAAHSVAAAH ATIAARAGAA PSSPAAAPAE RLGFRLSSLA GRALRSPLPA RRAAAAASSS RRSGSQRVRA SAAVETVEAA ATGELLDKSV NAIRFLAIDA
101: VEKAVSGHPG LPMGCAPMGH ILYDEVMRYN PKNPYWFNRD RFVLSAGHGC MLQYALLHLA GYDAVKEEDL KQFRQWGSST PGHPENFETP GVEVTTGPLG
201: QGIANAVGLA LAEKHLAARF NKPDSEIVDH YTYCIVGDGC NMEGILTEAC SLAGHWGLGK LIVFYDDNHI SIDGDTEIAF TEDVSGRFEA LGWHTLWVKN
301: GNDGYDEIRK AIQEAKSVTD KPTMIKVTTT IGFGSPNKAN SYAVHGAALG TSEVEATRAN LGWPYEPFFV PEDVKSHWSR HIPQGAALEA DWDAKFAQYE
401: QKYPEDAATL KSIITGELPA GWADALPQYT TESPADATRN LSQQCLNALA KVVPGLIGGS ADLASSNMTL LKMFGDFQKD TPEERNVRFG VREHGMGAIC
501: NGIALHTPGL IPYCATFFVF TDYMRGAMRI SALSEAGVIY VMTHDSIGLG EDGPTHQPIE HLVSFRAMPN MLMFRPADGK ETAGAYKVAV LNRKRPSILA
601: LSRQKLPHLP GTSIEGVAKG GYTISDNSTD NKPDYIIMST GSEVEIAVKA AEELTKEGKT VRVVSFVCWE LFDEQSDEYK ESVLPEAVTA RISIEAGSTL
701: GWQKYVGSKG KTIGIDKFGA SAPAPKIYKE YGITAENVIA AAKSL

Best Arabidopsis Sequence Match ( AT3G60750.1 )
(BLAST)

001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F

Arabidopsis Description

TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.