CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60750.1	CDY32970	AT5G42980.1	15352244
AT3G60750.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41143	Canola	plastid	98.11	98.24
CDX89074	Canola	plastid	93.64	94.15
CDY48374	Canola	plastid	93.5	94.01
AT3G60750.1	Thale cress	plastid	92.42	92.17
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	41.41	87.68
CDY68196	Canola	plastid	84.57	84.92
Os06t0133800-01	Rice	extracellular, plastid	77.67	84.66
CDX74726	Canola	plastid	83.9	84.24
TraesCSU01G063400.1	Wheat	peroxisome	71.99	84.04
TraesCS7A01G071100.2	Wheat	peroxisome	71.99	84.04
GSMUA_AchrUn_...	Banana	cytosol	49.12	83.45
HORVU7Hr1G013600.3	Barley	peroxisome	76.18	82.55
VIT_16s0022g01440.t01	Wine grape	plastid	80.78	81.89
GSMUA_Achr9P20740_001	Banana	peroxisome	65.9	81.44
CDX67840	Canola	mitochondrion	55.35	81.15
Solyc10g018300.1.1	Tomato	plastid	78.48	78.27
PGSC0003DMT400056799	Potato	cytosol, plastid	78.35	78.14
GSMUA_Achr3P11500_001	Banana	cytosol	15.02	77.62
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	18.0	77.33
TraesCS7D01G066500.1	Wheat	plastid	77.94	77.32
VIT_15s0048g00370.t01	Wine grape	plastid	77.81	77.18
GSMUA_Achr3P11550_001	Banana	plastid	77.81	76.56
PGSC0003DMT400018062	Potato	cytosol, extracellular	77.0	76.27
GSMUA_Achr1P19800_001	Banana	plastid	67.12	73.92
Solyc05g050970.2.1	Tomato	plastid	77.13	73.64
CDY31467	Canola	plastid	23.27	69.92
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	38.16	68.12
CDY56721	Canola	cytosol	8.66	17.39

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	Gene3D:3.40.50.920
Gene3D:3.40.50.970	MapMan:3.9.2.3	GO:A0A078C4M4	EnsemblPlants:CDX71785	ProteinID:CDX71785	ProteinID:CDX71785.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004802	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740
EnsemblPlantsGene:GSBRNA2T00155495001	InterPro:IPR009014	PFAM:PF00456	PFAM:PF02779	PFAM:PF02780	ScanProsite:PS00801
ScanProsite:PS00802	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	MetaCyc:PWY-1861	MetaCyc:PWY-5723	MetaCyc:PWY-6891
MetaCyc:PWY-6892	MetaCyc:PWY-6901	MetaCyc:PWY-7560	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
InterPro:THDP-binding	TIGRFAMs:TIGR00232	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C
InterPro:Transketolase_N	InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	UniPathway:UPA00064	UniParc:UPI0004EE59C4	SEG:seg

Description

BnaC08g30890D

Coordinates

chrLK031795:-:536398..539416

Molecular Weight (calculated)

79629.3 Da

IEP (calculated)

6.272

GRAVY (calculated)

-0.209

Length

739 amino acids

Sequence
(BLAST)

001: MASTSSLALS QALLARAISH HGSDQRISLP SPFSRAPASS SRRRNNAAAS TTKLRSLRPL AVRAAAVDTL EPTTDASIVD KSVNTIRFLA IDAVEKAKSG
101: HPGLPMGCAP MAHILYDEVM RYNPKNPYWF NRDRFVLSAG HGCMLLYALL HLAGYDSVLE EDLKSFRQWG SKTPGHPENF ETPGIEVTTG PLGQGIANAV
201: GLALVEKHLA ARFNKPDAEV VDHYTYVILG DGCQMEGISN EAASLAGHWG LGKLIAFYDD NHISIDGDTE IAFTENVDQR FEALGWHVIW VKNGNTGYDE
301: IRAAIKEAKA VTDKPTLIKV TTTIGYGSPN KANSYSVHGA ALGEKEVEAT RNNLGWPYEP FKVPDEVKSH WSRHTPDGKA LESDWNASFA AYEKKYPEEA
401: AELKSIITGE LPAGWEKALP TYTPESPGDA TRNLSQQCLN ALAKVVPGFL GGSADLASSN MTLLKAFGDF QKATPEERNL RFGVREHGMG GICNGIALHS
501: PGLIPYCATF FVFTDYMRGA MRISALSEAG VIYVMTHDSI GLGEDGPTHQ PVEHLASFRA MPNTLMFRPA DGNETAGAYK IAVTKRKTPS ILALSRQKLP
601: QLPGTSIEGV EKGGYTISDN SSGNKPDVIL VGTGSELEIA AQAAEVLRKE GKTVRVVSFV CWELFDEQTD EYKESVLPSG VSARVSIEAA STFGWGKIVG
701: GEGKSIGINS FGASAPAPLL YKEFGITVEA VVDAAKSFF

Best Arabidopsis Sequence Match ( AT3G60750.1 )
(BLAST)

001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F

Arabidopsis Description

TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.