CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31467	Canola	plastid	6.52	9.76
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	9.24	9.74
CDX67840	Canola	mitochondrion	12.23	8.93
CDX74726	Canola	plastid	17.39	8.7
CDY68196	Canola	plastid	17.39	8.7
CDY41143	Canola	plastid	17.39	8.67
CDX71785	Canola	plastid	17.39	8.66
CDX89074	Canola	plastid	17.12	8.57
CDY48374	Canola	plastid	17.12	8.57
PGSC0003DMT400038242	Potato	plastid	14.67	8.44
VIT_13s0019g04500.t01	Wine grape	plastid	13.59	7.86
Solyc01g018020.1.1	Tomato	plastid	14.13	6.61
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	3.26	5.91

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.970	Gene3D:3.90.226.10
MapMan:35.1	UniProt:A0A078J311	EnsemblPlants:CDY56721	ProteinID:CDY56721	ProteinID:CDY56721.1	EnsemblPlantsGene:GSBRNA2T00019958001
PFAM:PF00456	PANTHER:PTHR43522	PANTHER:PTHR43522:SF3	MetaCyc:PWY-6891	MetaCyc:PWY-6892	MetaCyc:PWY-7560
SUPFAM:SSF52518	InterPro:THDP-binding	InterPro:Transketolase_N	InterPro:Transketolase_fam	UniPathway:UPA00064	UniParc:UPI0004EEEA89

Description

BnaCnng31080DBnaCnng31080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J311]

Coordinates

chrLK033514:+:14202..21405

Molecular Weight (calculated)

40798.4 Da

IEP (calculated)

9.477

GRAVY (calculated)

-0.177

Length

368 amino acids

Sequence
(BLAST)

001: MSKCILDVPR PVGPTRILGE RYSGTHQIHF LPSVTYMAAV IKEENRISNI GESDGDSVTG GASGRFSLKE AAVPVLRFSI GHLLLTRGIF LIGYRRSDVV
101: TRGVRLHKLY RNWEEDPNIG GSGRAFCAGG DIVSIYHLRK RGSPDAIFWT LCTKVQTSLH RLMKSTWKDL CGDELAAGNG DSNYQRIFAK PEKQSFDATQ
201: QQGLIHHGLK QITRVRYFSG NLVLKHCFPC MLLVTLRCML QVEKLKNEVK QRISEVPLGF GLFTVHHRVG HPENFETPGI EVITGPLGQG IANAVGLPLA
301: EKHLAARFNK PDAEVVDHYT NTGYVEISAA IKEAKAVTDK STLIKVTTVG YESPNKAKLM LCPWSCTW

Best Arabidopsis Sequence Match ( AT3G60750.2 )
(BLAST)

001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEDLKQFRQW GSKTPGHPEN FETPGIEVTT GPLGQGIANA
201: VGLALAEKHL AARFNKPDAE VVDHYTYAIL GDGCQMEGIS NEACSLAGHW GLGKLIAFYD DNHISIDGDT EIAFTENVDQ RFEALGWHVI WVKNGNTGYD
301: EIRAAIKEAK TVTDKPTLIK VTTTIGYGSP NKANSYSVHG AALGEKEVEA TRNNLGWPYE PFQVPDDVKS HWSRHTPEGA TLESDWSAKF AAYEKKYPEE
401: ASELKSIITG ELPAGWEKAL PTYTPESPGD ATRNLSQQCL NALAKVVPGF LGGSADLASS NMTLLKAFGD FQKATPEERN LRFGVREHGM GAICNGIALH
501: SPGLIPYCAT FFVFTDYMRG AMRISALSEA GVIYVMTHDS IGLGEDGPTH QPIEHIASFR AMPNTLMFRP ADGNETAGAY KIAVTKRKTP SILALSRQKL
601: PHLPGTSIEG VEKGGYTISD DSSGNKPDVI LIGTGSELEI AAQAAEVLRK DGKTVRVVSF VCWELFDEQS DEYKESVLPS DVSARVSIEA ASTFGWGKIV
701: GGKGKSIGIN SFGASAPAPL LYKEFGITVE AVVDAAKSFF

Arabidopsis Description

TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.