CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60750.1	CDY32970	AT5G42980.1	15352244
AT3G60750.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003426.1-P	Field mustard	cytosol	76.59	83.55
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	54.37	78.51
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	26.39	77.33
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	50.79	61.84
CDX89074	Canola	plastid	81.75	56.05
CDY48374	Canola	plastid	81.75	56.05
CDY41143	Canola	plastid	81.55	55.69
CDX71785	Canola	plastid	81.15	55.35
AT3G60750.1	Thale cress	plastid	80.75	54.93
TraesCSU01G063400.1	Wheat	peroxisome	68.65	54.66
TraesCS7A01G071100.2	Wheat	peroxisome	68.45	54.5
Os06t0133800-01	Rice	extracellular, plastid	69.05	51.33
HORVU7Hr1G013600.3	Barley	peroxisome	69.05	51.03
CDY68196	Canola	plastid	73.81	50.54
CDX74726	Canola	plastid	73.21	50.14
GSMUA_Achr9P20740_001	Banana	peroxisome	59.13	49.83
Solyc10g018300.1.1	Tomato	plastid	72.22	49.12
VIT_16s0022g01440.t01	Wine grape	plastid	71.03	49.11
PGSC0003DMT400056799	Potato	cytosol, plastid	72.02	48.99
PGSC0003DMT400018062	Potato	cytosol, extracellular	70.63	47.72
TraesCS7D01G066500.1	Wheat	plastid	68.65	46.44
GSMUA_Achr3P11550_001	Banana	plastid	68.65	46.07
VIT_15s0048g00370.t01	Wine grape	plastid	68.06	46.04
Solyc05g050970.2.1	Tomato	plastid	70.44	45.87
GSMUA_AchrUn_...	Banana	cytosol	36.71	42.53
GSMUA_Achr1P19800_001	Banana	plastid	53.37	40.09
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	34.52	33.98
CDY31467	Canola	plastid	9.52	19.51
CDY56721	Canola	cytosol	8.93	12.23
GSMUA_Achr3P11500_001	Banana	cytosol	1.59	5.59

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970
MapMan:3.9.2.3	GO:A0A078BT92	EnsemblPlants:CDX67840	ProteinID:CDX67840	ProteinID:CDX67840.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00099037001	InterPro:IPR009014	PFAM:PF00456
PFAM:PF02779	PFAM:PF02780	ScanProsite:PS00802	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	MetaCyc:PWY-6891
MetaCyc:PWY-6892	MetaCyc:PWY-7560	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N	InterPro:Transketolase_fam
UniPathway:UPA00064	UniParc:UPI0004EF2DF1	SEG:seg	:	:	:

Description

BnaA07g18800D

Coordinates

chrLK031787:+:2504612..2509371

Molecular Weight (calculated)

54939.7 Da

IEP (calculated)

7.274

GRAVY (calculated)

-0.130

Length

504 amino acids

Sequence
(BLAST)

001: MSRRIIGSLS LRLRVIIVWP RSRSLLLRLE PYSTTPIVVG TDIYIVVGSE KHTDPEHSVW KVAYWKVASW SKVASVGTTF GWHVICVKNG NTEYDETCAA
101: IKEAKSVTEK PTLIKVTTTI VYGSPNKANS YSVYGAALGE KEVEATRNNL GWPYEPFQVP DEVKSHWSRH TPKGSALESN WNATLAYEKK YPEEAAELKC
201: ELPAGWEKAL PTYTPESPGD ATRNLSQQCL NALAKVVPGF LEINLRFGVR EHGMGAICNG IALHSPGLIP YCATFFVFTD YMRGAMRISA LSEAGVIYVM
301: THDSIGLGED GPTHQPIEHI ASFRAMPNTL MFRPADGNET AGAYRITVTK RKTPSILALS RQKLPQLPGT SIEGVEKGGY TISDDSSGNK PDVILIGTGS
401: ELEIAAQAAE VLRKEGKTVR VVSFVCWELF EEQTDEYKES VLPSGVTARV SIEAASTFGW GKIVGGRGKS IGINSFGASA PAPLLYKEFG IIVEAVVDAA
501: KSLF

Best Arabidopsis Sequence Match ( AT2G45290.1 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.