CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60750.1	CDY32970	AT5G42980.1	15352244
AT3G60750.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	32.09	65.12
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	67.34	56.76
CDX67840	Canola	mitochondrion	78.51	54.37
CDX89074	Canola	plastid	88.25	41.9
CDY48374	Canola	plastid	87.97	41.77
CDY41143	Canola	plastid	87.97	41.6
CDX71785	Canola	plastid	87.68	41.41
AT3G60750.1	Thale cress	plastid	87.11	41.03
TraesCSU01G063400.1	Wheat	peroxisome	73.93	40.76
TraesCS7A01G071100.2	Wheat	peroxisome	73.64	40.6
HORVU7Hr1G013600.3	Barley	peroxisome	74.21	37.98
CDY68196	Canola	plastid	79.08	37.5
CDX74726	Canola	plastid	78.51	37.23
Os06t0133800-01	Rice	extracellular, plastid	72.21	37.17
VIT_16s0022g01440.t01	Wine grape	plastid	76.5	36.63
GSMUA_Achr9P20740_001	Banana	peroxisome	60.17	35.12
TraesCS7D01G066500.1	Wheat	plastid	73.64	34.5
GSMUA_Achr3P11550_001	Banana	plastid	73.35	34.09
VIT_15s0048g00370.t01	Wine grape	plastid	71.92	33.69
PGSC0003DMT400056799	Potato	cytosol, plastid	69.91	32.93
Solyc10g018300.1.1	Tomato	plastid	69.91	32.93
PGSC0003DMT400018062	Potato	cytosol, extracellular	67.34	31.5
Solyc05g050970.2.1	Tomato	plastid	67.34	30.36
GSMUA_Achr1P19800_001	Banana	plastid	52.44	27.27
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	39.83	27.15
GSMUA_AchrUn_...	Banana	cytosol	32.38	25.98
CDY56721	Canola	cytosol	9.74	9.24
GSMUA_Achr3P11500_001	Banana	cytosol	0.57	1.4
CDY31467	Canola	plastid	0.86	1.22

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	Gene3D:3.40.50.920	Gene3D:3.40.50.970
MapMan:35.1	GO:A0A078J0Z0	UniProt:A0A078J0Z0	EnsemblPlants:CDY56727	ProteinID:CDY56727	ProteinID:CDY56727.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00019962001	InterPro:IPR009014
PFAM:PF00456	PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	MetaCyc:PWY-6891
MetaCyc:PWY-6892	MetaCyc:PWY-7560	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	InterPro:Transketolase_N	InterPro:Transketolase_fam	UniPathway:UPA00064
UniParc:UPI0004EE2B07	:	:	:	:	:

Description

BnaCnng31120DBnaCnng31120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0Z0]

Coordinates

chrLK033514:+:39831..41071

Molecular Weight (calculated)

37084.1 Da

IEP (calculated)

6.635

GRAVY (calculated)

-0.176

Length

349 amino acids

Sequence
(BLAST)

001: MKLKGKLNLN QSHWSRQTPE GSALESNWNA TFAAYQKKYP EEAAELKSII TGELPAGWEK ALPTHTPESP GDATRNLSQQ CLNALAKVVP GFIGGSADLA
101: SSNMTLLKAF GDFQKATPEE RNLRFGVREH GMGAICNGIA LHNPAGVIYV MTHDSIGLGE DGPTTHQPIE HIASFRAMPN TLMFRPTDGN ETAGAYKISV
201: TKRKTPAILA LYRQNLPQLP GTSIEGVEKG GNTISDNSSG NNPDVILIGT GSELEIATQA AEVIMKEGKT VRVVSFVCWE LFEESVLPSG VSARVSIEAA
301: STFGWGKIYG GRGKSIGINS FGASAAAPLL SKEFGITVEA VVDAAKSLL

Best Arabidopsis Sequence Match ( AT2G45290.1 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.