Factsheet for GSMUA_Achr9P20740_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
plastid 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	65.05	89.43
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	24.41	84.88
GSMUA_Achr3P11500_001	Banana	cytosol	19.4	81.12
TraesCSU01G063400.1	Wheat	peroxisome	81.61	77.09
TraesCS7A01G071100.2	Wheat	peroxisome	81.44	76.94
Os06t0133800-01	Rice	extracellular, plastid	85.62	75.52
GSMUA_Achr1P19800_001	Banana	plastid	81.77	72.88
HORVU7Hr1G013600.3	Barley	peroxisome	81.94	71.85
GSMUA_Achr3P11550_001	Banana	plastid	88.63	70.57
VIT_16s0022g01440.t01	Wine grape	plastid	85.79	70.37
KRH65318	Soybean	nucleus	85.45	69.9
Zm00001d045451_P001	Maize	plastid	85.12	69.16
OQU75756	Sorghum	plastid	85.12	68.78
KXG21442	Sorghum	plastid	83.61	67.75
CDX74726	Canola	plastid	81.44	66.17
AT2G45290.1	Thale cress	plastid	81.94	66.13
CDY41143	Canola	plastid	81.61	66.12
CDY48374	Canola	plastid	81.27	66.12
Bra004898.1-P	Field mustard	plastid	81.27	66.03
Bra007555.1-P	Field mustard	plastid	81.44	65.99
Bra014473.1-P	Field mustard	plastid	81.1	65.99
CDX71785	Canola	plastid	81.44	65.9
CDX89074	Canola	plastid	80.94	65.85
AT3G60750.1	Thale cress	plastid	81.44	65.72
CDY68196	Canola	plastid	80.77	65.62
TraesCS7D01G066500.1	Wheat	plastid	81.61	65.5
VIT_15s0048g00370.t01	Wine grape	plastid	81.44	65.37
Bra003426.1-P	Field mustard	cytosol	50.17	64.94
KRG93011	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	80.27	64.86
KRH36260	Soybean	endoplasmic reticulum, nucleus, plastid	79.93	64.42
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	44.48	64.25
PGSC0003DMT400056799	Potato	cytosol, plastid	79.6	64.24
Solyc10g018300.1.1	Tomato	plastid	79.26	63.97
PGSC0003DMT400018062	Potato	cytosol, extracellular	79.77	63.94
EER89132	Sorghum	plastid	79.77	63.77
CDY31467	Canola	plastid	26.09	63.41
Solyc05g050970.2.1	Tomato	plastid	80.1	61.89
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	35.12	60.17
CDX67840	Canola	mitochondrion	49.83	59.13
GSMUA_Achr11P...	Banana	cytosol	12.21	35.78
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	27.42	32.03
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	10.7	31.53

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	Gene3D:3.40.50.920
Gene3D:3.40.50.970	MapMan:3.9.2.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
EnsemblPlantsGene:GSMUA_Achr9G20740_001	EnsemblPlants:GSMUA_Achr9P20740_001	EnsemblPlants:GSMUA_Achr9T20740_001	InterPro:IPR009014	UniProt:M0U233	PFAM:PF00456
PFAM:PF02779	PFAM:PF02780	PANTHER:PTHR43522	PANTHER:PTHR43522:SF3	SMART:SM00861	SUPFAM:SSF52518
SUPFAM:SSF52922	InterPro:THDP-binding	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	InterPro:Transketolase_N
InterPro:Transketolase_fam	UniParc:UPI0002952A7B	SEG:seg	:	:	:

Description

Transketolase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G20740_001]

Coordinates

chr9:-:25135051..25140440

Molecular Weight (calculated)

65176.2 Da

IEP (calculated)

6.177

GRAVY (calculated)

-0.238

Length

598 amino acids

Sequence
(BLAST)

001: MGCAPMGHIL YDEVMKYIPK NPYWFNRDRF VLSAGHGCML HYALLHLAGY DSVKSHTGKC LSDFASIEDI KEFRQWGSRT PGHPENFETP GIEVTTGPLG
101: QGVANAVGLA LAEKHLAARF NKPDNEIVDH YTYVILGDGC QMEGISNEAC SLAGHWGLGK LIAFYDDNHI SIDGDTEIAF TEDVMARFEA LGWHTIWVKN
201: GNNGYDDIRA AIKEAKAVKD KPTLIKVTTT IGYGSPNKAN TYSVHGSALG AKEVDATRQN LGWPYEPFHV PEEVKSHWSC HVPEGASFEA EWNAKFAEYE
301: KKYKEDAAQL KGIISGELPA GWETALPTYT SESPADATRN LSQQCLNALA KVLPGFLGGS ADLASSNMTL LKTFGDFQKG TPEERNVRFG VREHGMGAIC
401: NGIALHSPGL LPYCATFFVF TDYMRAAMRI SALSEARVIY VAVLNKKRPS VLALSRQKLP QLAGTSAEGV EKGGYIISDN SSGNRPDLIF MGTGSELEIA
501: AKAADELRKE GKTVRVVSLV SWELFDEQSD EYKESVFPAS VTARISIEAG TTLGWEKFVG SKGKAIGIDR FGASAPAGRI YKEFGITAEN IIATARSL

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.