Factsheet for Bra014473.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60750.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89074	Canola	plastid	98.23	98.23
AT3G60750.1	Thale cress	plastid	95.51	94.74
Bra007555.1-P	Field mustard	plastid	94.29	93.9
Bra003426.1-P	Field mustard	cytosol	55.1	87.66
Zm00001d046962_P002	Maize	cytosol	13.61	86.96
TraesCSU01G063400.1	Wheat	peroxisome	72.65	84.36
TraesCS7A01G071100.2	Wheat	peroxisome	72.65	84.36
Os06t0133800-01	Rice	extracellular, plastid	77.69	84.22
GSMUA_AchrUn_...	Banana	cytosol	49.52	83.68
Bra004898.1-P	Field mustard	plastid	83.27	83.15
HORVU7Hr1G013600.3	Barley	peroxisome	76.73	82.7
GSMUA_Achr9P20740_001	Banana	peroxisome	65.99	81.1
VIT_16s0022g01440.t01	Wine grape	plastid	79.86	80.52
Solyc10g018300.1.1	Tomato	plastid	79.46	78.81
PGSC0003DMT400056799	Potato	cytosol, plastid	79.18	78.54
GSMUA_Achr3P11500_001	Banana	cytosol	15.24	78.32
TraesCS7D01G066500.1	Wheat	plastid	78.5	77.45
PGSC0003DMT400018062	Potato	cytosol, extracellular	77.96	76.81
VIT_15s0048g00370.t01	Wine grape	plastid	77.69	76.64
GSMUA_Achr3P11550_001	Banana	plastid	78.1	76.43
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	17.82	76.16
Solyc05g050970.2.1	Tomato	plastid	78.1	74.16
GSMUA_Achr1P19800_001	Banana	plastid	66.67	73.03
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	38.37	68.12
OQU80099	Sorghum	plastid	5.58	49.4

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	Gene3D:3.40.50.920
Gene3D:3.40.50.970	MapMan:3.9.2.3	EnsemblPlantsGene:Bra014473	EnsemblPlants:Bra014473.1	EnsemblPlants:Bra014473.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004802	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	InterPro:IPR009014
UniProt:M4DDA5	PFAM:PF00456	PFAM:PF02779	PFAM:PF02780	ScanProsite:PS00801	ScanProsite:PS00802
PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding
TIGRFAMs:TIGR00232	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C	InterPro:Transketolase_N
InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	UniParc:UPI0002543C04	SEG:seg	:	:

Description

AT3G60750 (E=0.0) | transketolase, putative

Coordinates

chrA04:-:853452..856821

Molecular Weight (calculated)

79274.0 Da

IEP (calculated)

6.304

GRAVY (calculated)

-0.192

Length

735 amino acids

Sequence
(BLAST)

001: MASTSSLALS QALLARAISL HGSDQRISLP SSFSRASASS RRRNAASMTK LRSIRPLVRA AAVETLETST DSSIIDKSVN SIRFLAIDAV EKAKSGHPGL
101: PMGCAPMAHI LYDEVMRYNP KNPYWFNRDR FVLSAGHGCM LLYALLHLAG YDSVLEEDLK SFRQWGSKTP GHPENFETPG IEVTTGPLGQ GIANAVGLAL
201: AEKHLAARFN KPDAEVVDHY TYVILGDGCQ MEGISNEAAS LAGHWGLGKL IAFYDDNHIS IDGDTEIAFT ENVDQRFEAL GWHVIWVKNG NTGYDEIRAA
301: IKEAKTVTDK PTLIKVTTTI GYGSPNKANS YSVHGAALGE KEVEATRNNL GWPYEPFQVP EEVKSHWSRH TPEGKALESD WNATFAAYEK KYPEEAAELK
401: SIITGELPAG WEKALPTYTP ESPGDATRNL SQQCLNAIAK VVPGFLGGSA DLASSNMTLL KASGDFQKAT PEERNLRFGV REHGMGAICN GIALHSPGLI
501: PYCATFFVFT DYMRGAMRIS ALSEAGVIYV MTHDSIGLGE DGPTHQPIEH IASFRAMPNT LMFRPADGNE TAGAYKIAVT KRKTPSILAL SRQKLPQLPG
601: TSIEGVAKGG YTISDDSTGN KPDVILIGTG SELEIAAQAA EVIRKEGKTV RVVSFVCWEL FDEQTDEYKE SVLPSGVSAR VSIEAASTFG WGKIVGGKGK
701: SIGINSFGAS APAPLLYKEF GITVEAVVDA AKSFF

Best Arabidopsis Sequence Match ( AT3G60750.1 )
(BLAST)

001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F

Arabidopsis Description

TKL-1Transketolase-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.