Factsheet for Os06t0133800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

cytosol 1
plastid 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plastid: 21433289
extracellular: 23159799
extracellular: 25047395
extracellular: 26072143
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G063400.1	Wheat	peroxisome	85.1	91.15
TraesCS7A01G071100.2	Wheat	peroxisome	85.1	91.15
HORVU7Hr1G013600.3	Barley	peroxisome	90.27	89.74
GSMUA_AchrUn_...	Banana	cytosol	55.9	87.13
GSMUA_Achr9P20740_001	Banana	peroxisome	75.52	85.62
OQU75756	Sorghum	plastid	92.18	84.46
Zm00001d045451_P001	Maize	plastid	91.59	84.38
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	21.24	83.72
KXG21442	Sorghum	plastid	91.0	83.6
TraesCS7D01G066500.1	Wheat	plastid	90.27	82.15
VIT_16s0022g01440.t01	Wine grape	plastid	87.02	80.93
GSMUA_Achr3P11550_001	Banana	plastid	88.2	79.63
KRH65318	Soybean	nucleus	85.25	79.07
CDY68196	Canola	plastid	85.25	78.53
AT2G45290.1	Thale cress	plastid	85.25	78.0
CDY41143	Canola	plastid	84.81	77.91
CDX89074	Canola	plastid	84.37	77.82
Bra007555.1-P	Field mustard	plastid	84.66	77.78
Bra014473.1-P	Field mustard	plastid	84.22	77.69
CDX71785	Canola	plastid	84.66	77.67
CDX74726	Canola	plastid	84.22	77.58
Bra004898.1-P	Field mustard	plastid	84.07	77.45
CDY48374	Canola	plastid	83.92	77.42
AT3G60750.1	Thale cress	plastid	84.37	77.19
GSMUA_Achr1P19800_001	Banana	plastid	75.66	76.45
KRG93011	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	83.33	76.35
Os04t0266900-01	Rice	plastid	80.38	76.33
Solyc10g018300.1.1	Tomato	plastid	83.04	75.98
VIT_15s0048g00370.t01	Wine grape	plastid	83.48	75.97
PGSC0003DMT400056799	Potato	cytosol, plastid	82.89	75.84
KRH36260	Soybean	endoplasmic reticulum, nucleus, plastid	82.6	75.47
PGSC0003DMT400018062	Potato	cytosol, extracellular	83.04	75.47
Bra003426.1-P	Field mustard	cytosol	51.03	74.89
Solyc05g050970.2.1	Tomato	plastid	82.89	72.61
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	37.17	72.21
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	43.51	71.26
CDX67840	Canola	mitochondrion	51.33	69.05
CDY31467	Canola	plastid	23.6	65.04
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	27.73	36.72

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	Gene3D:3.40.50.920
Gene3D:3.40.50.970	MapMan:3.9.2.3	ProteinID:BAF18625.1	ProteinID:BAS96007.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004802	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	InterPro:IPR009014
EnsemblPlantsGene:Os06g0133800	EnsemblPlants:Os06t0133800-01	PFAM:PF00456	PFAM:PF02779	PFAM:PF02780	ScanProsite:PS00801
PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	UniProt:Q0DEU8	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
InterPro:THDP-binding	TIGRFAMs:TIGR00232	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	InterPro:Transketolase_N
InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	UniParc:UPI0000E12668	:	:	:

Description

TransketolaseSimilar to Transferase. (Os06t0133800-01);Similar to Transketolase, chloroplastic. (Os06t0133800-02)

Coordinates

chr6:-:1808969..1812083

Molecular Weight (calculated)

73453.1 Da

IEP (calculated)

5.412

GRAVY (calculated)

-0.196

Length

678 amino acids

Sequence
(BLAST)

001: VRAAAVETLE GQAATGALLE KSVNTIRFLA IDAVEKANSG HPGLPMGCAP MGHILYDEVM RYNPKNPYWF NRDRFILSAG HGCMLQYALL HLAGYDAVLE
101: EDLKQFRQWG SKTPGHPENF ETPGVEVTTG PLGQGIANAV GLALAEKHLA ARFNKPDSEI VDHYTYCILG DGCQMEGISN EACSLAGHWG LGKLIAFYDD
201: NHISIDGDTE IAFTEDVSAR FEALGWHTIW VKNGNDGYDE IRAAIKEAKA VTDKPTLIKV TTTIGFGSPN KANSYSVHGS ALGTKEVEAT RENLGWPYEP
301: FFVPEDVKSH WSRHVPQGAA FEADWNAKFA EYEKKYPEDA ATLKSIVSGE LPAGWADALP KYTPESPADA TRNLSQQCLN ALAKVVPGLL GGSADLASSN
401: MTLLKMFGDF QKDTPEERNV RFGVREHGMG AICNGIALHS PGLIPYCATF FVFTDYMRAA MRISALCEAG VIYVMTHDSI GLGEDGPTHQ PIEHLVSFRA
501: MPNILMLRPA DGNETAGAYK IAVLNRKRPS VLALSRQKLA QLPGTSIEGV EKGGYIVSDN STGNKPDFIV MSTGSELEIV AKAADELRKE GKTVRVVSFV
601: CWELFDEQSA EYKESVLPEA VTARVSLEAG STLGWQKYVG SKGKAIGIDK FGASAPAGKI YQEYGITAEN VIATAKSL

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.