Factsheet for Os04t0266900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004171_P002	Maize	extracellular, plastid	77.73	87.68
TraesCS2A01G075200.1	Wheat	plastid	84.31	84.91
HORVU6Hr1G003210.33	Barley	cytosol	38.24	84.26
TraesCS2B01G090100.1	Wheat	plastid	82.49	83.66
TraesCS2D01G073900.1	Wheat	plastid	82.63	83.33
EES10537	Sorghum	plastid	84.17	82.78
Os06t0133800-01	Rice	extracellular, plastid	76.33	80.38
HORVU2Hr1G012790.1	Barley	peroxisome	82.35	77.37
HORVU5Hr1G007220.1	Barley	cytosol	16.25	69.88
KRH29475	Soybean	cytosol	34.17	60.85

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	Gene3D:3.40.50.920
Gene3D:3.40.50.970	MapMan:3.9.2.3	EntrezGene:4335330	EMBL:AK069447	ProteinID:BAF14249.1	ProteinID:BAS88301.1
ProteinID:CAD39964.2	ncoils:Coil	ProteinID:EEE60633.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004802
GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	InterPro:IPR009014	EnsemblPlantsGene:Os04g0266900	EnsemblPlants:Os04t0266900-01
PFAM:PF00456	PFAM:PF02779	PFAM:PF02780	ScanProsite:PS00801	PANTHER:PTHR43522	PANTHER:PTHR43522:SF3
UniProt:Q7XWP9	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	InterPro:THDP-binding	TIGRFAMs:TIGR00232
InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C	InterPro:Transketolase_N	InterPro:Transketolase_bac-like	InterPro:Transketolase_fam
UniParc:UPI00001B132F	RefSeq:XP_015633388.1	SEG:seg	:	:	:

Description

Transketolase C-terminal-like domain containing protein. (Os04t0266900-01)

Coordinates

chr4:+:11026653..11032673

Molecular Weight (calculated)

77652.4 Da

IEP (calculated)

7.239

GRAVY (calculated)

-0.276

Length

714 amino acids

Sequence
(BLAST)

001: MATATQAPTS PAAASGRGSV LPLLRGRPST RVRLAVGRRP QTALRAQPPG AAEVVEQSVN TIRFLAVDSV EKAKSGHPGL PMGCAPLGHV LFDEFLRFNP
101: KNPYWFDRDR FILSAGHGCM LQYALLHLAG YDSVTMDDLK AFRQWGSRTP GHPENFETPG VEVTTGPLGQ GFANAVGLAL AEKHLAARFN KPDLKIVDHH
201: TYVILGDGCQ MEGVSNEASS LAGHWGLGKL IAFYDDNHIS IDGSTGIAFT EDALARYEAL GWHTIWVKNG NTGYDDIRAA IKEAKAVKDK PTLIKVTTTI
301: GYGSPNKANT YSVHGSALGT KEVEATKNNL SWHHEPFHVP DEVKRHWSHH IDEGASLEAE WNKKIVEYEK KYRQEAAELK SIISGELPSG WDNSLPKYTP
401: ENPADATRNL SQQCLNALAK AIPGFLGGSA DLATSNMTLL KMFGDFQKDT PEERNIRFGV REHAMGAISN GIALHSPGLI PYCATFFVFT DYMRAAIRLS
501: ALCGSRVIFV MTHDSIGLGE DGPTHQPVEQ LFSLRAMPNI LMLRPADGNE TSGAYKIAVL NRQRPSVLAL SRQKLQQLKG TSAEGVAKGG YIISDNSSGN
601: KPDIILIGTG SELEIVEKAA DELRKDGKTV RVVSLVCWEL FEEQSEKYKE SVFPSEVTSR ISVEAGVTFG WEKYIGEKGK AIGVDRFGSS APAGKIYKEL
701: GLTVENVIAT AKSL

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.