CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004171_P002	Maize	extracellular, plastid	82.51	94.63
Os04t0266900-01	Rice	plastid	82.78	84.17
HORVU6Hr1G003210.33	Barley	cytosol	37.33	83.64
TraesCS2A01G075200.1	Wheat	plastid	80.99	82.93
TraesCS2D01G073900.1	Wheat	plastid	80.44	82.49
TraesCS2B01G090100.1	Wheat	plastid	79.2	81.68
HORVU2Hr1G012790.1	Barley	peroxisome	80.99	77.37
KXG21442	Sorghum	plastid	74.24	73.04
OQU75756	Sorghum	plastid	74.38	72.97
HORVU5Hr1G007220.1	Barley	cytosol	16.12	70.48
EER89132	Sorghum	plastid	68.87	66.84
KRH29475	Soybean	cytosol	33.33	60.35
OQU80099	Sorghum	plastid	5.51	48.19

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	Gene3D:3.40.50.920
Gene3D:3.40.50.970	MapMan:3.9.2.3	EntrezGene:8085774	UniProt:C5YDD1	EnsemblPlants:EES10537	ProteinID:EES10537
ProteinID:EES10537.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004802	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	InterPro:IPR009014	PFAM:PF00456	PFAM:PF02779	PFAM:PF02780	ScanProsite:PS00801
PANTHER:PTHR43522	PANTHER:PTHR43522:SF3	MetaCyc:PWY-1861	MetaCyc:PWY-5723	MetaCyc:PWY-6891	MetaCyc:PWY-6892
MetaCyc:PWY-6901	MetaCyc:PWY-7560	SMART:SM00861	EnsemblPlantsGene:SORBI_3006G034300	SUPFAM:SSF52518	SUPFAM:SSF52922
unigene:Sbi.2030	InterPro:THDP-binding	TIGRFAMs:TIGR00232	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_C
InterPro:Transketolase_N	InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	UniParc:UPI0001A86B9A	RefSeq:XP_002446209.1	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:9689969..9694142

Molecular Weight (calculated)

78680.4 Da

IEP (calculated)

6.321

GRAVY (calculated)

-0.198

Length

726 amino acids

Sequence
(BLAST)

001: MVTPTSTTPV STASAAAPAP GSGRGGVLRL LRYSACSLLP SAAAARSGAR LTTALRARTQ PAEPELVEQS VNTIRFLAVD AVEKAQSGHP GLPMGCAPLG
101: HVLFDEFLRF NPKNPAWFDR DRFVLSAGHG CMLQYALLHL AGYDAVKMDD LKAFRQWRSR TPGHPENFET PGVEVTTGPL GQGFANAVGL ALAEKHLASR
201: FNKTDMKIVD HYTYVILGDG CQMEGVSNEA ASLAGHWGLG KLIAFYDDNH ISIDGNTDIA FTEDVLARYE ALGWHTIWVK NGNTGYDDIR AAIKEAKGVK
301: DKPTLIKVTT TIGFGSPNKA NTYSVHGTAL GSKEVEATRS NLGWLHEPFH VPDEVKRHWS HHIDDGASLE AEWNARFVEY DKKYHQEAAE LKSIISGELP
401: SGWDNALPTY APEISPDATR NLSQQCLNAL AKVIPGFLGG SADLATSNMT LLKMFGDFQR DTPEERNIRF GVREHGMGAI SNGIAVHSPG LIPYCATFFV
501: FTDYMRASIR LSALSESGVI FVMTHDSIGL GEDGPTHQPV EQLFSLRAMP NILMLRPADG NETSGAYKIA VLNRKRPSII ALSRQKLPQV KGTSVDAVSK
601: GGYIISDNSS GNKPDFILIG TGSELEIAEN AAGELRNKGR TVRVVSLVCW ELFEEQPEEY KESVLPNEVT SRISIEAGVT FGWEKYIGQK GKAIGIDRFG
701: VSAPAGKIYE ELGLTVENVI AAAEAL

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.