Factsheet for VIT_16s0022g01440.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046962_P002	Maize	cytosol	13.99	88.7
GSMUA_AchrUn_...	Banana	cytosol	52.26	87.59
Os06t0133800-01	Rice	extracellular, plastid	80.93	87.02
GSMUA_Achr9P20740_001	Banana	peroxisome	70.37	85.79
KRH65318	Soybean	nucleus	85.73	85.5
TraesCSU01G063400.1	Wheat	peroxisome	73.8	84.99
TraesCS7A01G071100.2	Wheat	peroxisome	73.8	84.99
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	19.75	83.72
HORVU7Hr1G013600.3	Barley	peroxisome	78.05	83.43
CDX71785	Canola	plastid	81.89	80.78
CDY41143	Canola	plastid	81.76	80.76
GSMUA_Achr3P11550_001	Banana	plastid	83.13	80.69
Bra007555.1-P	Field mustard	plastid	81.62	80.62
CDX74726	Canola	plastid	81.34	80.57
AT2G45290.1	Thale cress	plastid	81.89	80.57
KRH36260	Soybean	endoplasmic reticulum, nucleus, plastid	81.89	80.46
CDY68196	Canola	plastid	81.21	80.43
Bra004898.1-P	Field mustard	plastid	81.21	80.43
KRG93011	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plastid	81.62	80.41
CDX89074	Canola	plastid	80.93	80.27
CDY48374	Canola	plastid	80.8	80.14
Bra014473.1-P	Field mustard	plastid	80.52	79.86
AT3G60750.1	Thale cress	plastid	81.07	79.76
VIT_15s0048g00370.t01	Wine grape	plastid	81.48	79.73
GSMUA_Achr3P11500_001	Banana	cytosol	15.36	78.32
PGSC0003DMT400056799	Potato	cytosol, plastid	79.42	78.14
PGSC0003DMT400018062	Potato	cytosol, extracellular	79.29	77.48
Solyc10g018300.1.1	Tomato	plastid	78.6	77.33
Bra003426.1-P	Field mustard	cytosol	48.83	77.06
GSMUA_Achr1P19800_001	Banana	plastid	70.92	77.05
TraesCS7D01G066500.1	Wheat	plastid	78.33	76.64
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	36.63	76.5
Solyc05g050970.2.1	Tomato	plastid	79.97	75.32
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	41.7	73.43
CDX67840	Canola	mitochondrion	49.11	71.03
CDY31467	Canola	plastid	22.09	65.45
VIT_13s0019g04500.t01	Wine grape	plastid	44.44	50.94
OQU80099	Sorghum	plastid	5.62	49.4

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	EntrezGene:100248004
wikigene:100248004	Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:3.9.2.3	ProteinID:CCB49283	ProteinID:CCB49283.1
ncoils:Coil	UniProt:F6HAM6	EMBL:FN595506	GO:GO:0003674	GO:GO:0003824	GO:GO:0004802
GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	InterPro:IPR009014	EntrezGene:LOC100248004	wikigene:LOC100248004
PFAM:PF00456	PFAM:PF02779	PFAM:PF02780	ScanProsite:PS00801	ScanProsite:PS00802	PANTHER:PTHR43522
PANTHER:PTHR43522:SF7	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922	TIGR:TC52655	TIGR:TC53221
TIGR:TC62439	InterPro:THDP-binding	TIGRFAMs:TIGR00232	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS
InterPro:Transketolase_C	InterPro:Transketolase_N	InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	UniParc:UPI0002108A24	ArrayExpress:VIT_16s0022g01440
EnsemblPlantsGene:VIT_16s0022g01440	EnsemblPlants:VIT_16s0022g01440.t01	unigene:Vvi.6795	RefSeq:XP_002266494	RefSeq:XP_002266494.2	SEG:seg

Description

No Description!

Coordinates

chr16:+:13451100..13455061

Molecular Weight (calculated)

78860.8 Da

IEP (calculated)

7.056

GRAVY (calculated)

-0.235

Length

729 amino acids

Sequence
(BLAST)

001: MAAASASSSL YLLPRTLNHH SSTPHPNRLS LSGLTPKTQA LRTRHGRRAR ATVRAAAVET LQKADTSLVE KSINTIRFLS IDAVEKANSG HPGLPMGCAP
101: MGHILYDEVM RYNPSNPYWF NRDRFVLSAG HGCMLQYALL HLAGYDSVKE EDLKSFRQWG SRTPGHPENF ETPGVEVTTG PLGQGIANAV GLAAVEKHLA
201: ARFNKPDNEI VDHYTYVILG DGCQMEGISN EVCSLAGHWG LGKLIAFYDD NHISIDGDTE IAFTESVDTR FEGLGWHVIW VKNGNTGYDE IRAAIKEAKA
301: VKDKPTLIKV TTTIGYGSPN KANSYSVHGS ALGAKEVDAT RKNLGWPHEP FHVPEDVKKH WSRHIPDGAA LEAEWNAKFA EYEKKYKEEA AELKSIITGE
401: LPAGWDKALP TYTPESAADA TRNLSQQCLN ALAKVLPGLL GGSADLASSN MTLLKMFGDF QKGTPEERNV RFGVREHGMG AICNGIALHS LGLIPYCATF
501: FVFTDYMRAA IRISALSEAG VIYVMTHDSI GLGEDGPTHQ PIEHLASFRA MPNILMLRPA DGNETAGAYK VAVVNRKRPS ILALSRQKLP QLPGTSIAGV
601: EKGGYAISDN SSGNKPDVIL IGTGSELEIA AKAGDELRKE GKTVRVVSLV SWELFDDQSD AYKESVLPAA VTARVSIEAG STFGWEKIVG SKGKAIGIDR
701: FGASAPAGKI YKEFGITVEA VIEAAKAVW

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.