Factsheet for PGSC0003DMT400018062

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050970.2.1	Tomato	plastid	98.39	94.83
Zm00001d046962_P002	Maize	cytosol	13.67	88.7
PGSC0003DMT400056799	Potato	cytosol, plastid	87.94	88.53
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	19.44	84.3
Os06t0133800-01	Rice	extracellular, plastid	75.47	83.04
TraesCSU01G063400.1	Wheat	peroxisome	68.63	80.88
TraesCS7A01G071100.2	Wheat	peroxisome	68.63	80.88
HORVU7Hr1G013600.3	Barley	peroxisome	73.06	79.91
GSMUA_Achr9P20740_001	Banana	peroxisome	63.94	79.77
VIT_16s0022g01440.t01	Wine grape	plastid	77.48	79.29
GSMUA_AchrUn_...	Banana	cytosol	45.98	78.85
Bra014473.1-P	Field mustard	plastid	76.81	77.96
CDX89074	Canola	plastid	76.54	77.69
AT3G60750.1	Thale cress	plastid	77.08	77.6
CDY48374	Canola	plastid	76.41	77.55
CDY41143	Canola	plastid	76.54	77.37
Bra007555.1-P	Field mustard	plastid	76.54	77.37
AT2G45290.1	Thale cress	plastid	76.81	77.33
CDX71785	Canola	plastid	76.27	77.0
GSMUA_Achr3P11500_001	Banana	cytosol	14.61	76.22
CDY68196	Canola	plastid	75.07	76.09
GSMUA_Achr3P11550_001	Banana	plastid	76.14	75.63
VIT_15s0048g00370.t01	Wine grape	plastid	75.47	75.57
CDX74726	Canola	plastid	74.53	75.54
Bra003426.1-P	Field mustard	cytosol	46.78	75.54
Bra004898.1-P	Field mustard	plastid	74.4	75.41
TraesCS7D01G066500.1	Wheat	plastid	73.99	74.09
GSMUA_Achr1P19800_001	Banana	plastid	64.61	71.83
CDX67840	Canola	mitochondrion	47.72	70.63
CDY56727	Canola	cytosol, mitochondrion, peroxisome, plastid	31.5	67.34
GSMUA_Achr3P11490_001	Banana	cytosol, mitochondrion, peroxisome, plastid	37.0	66.67
OQU80099	Sorghum	plastid	5.63	50.6
PGSC0003DMT400038242	Potato	plastid	42.49	49.53
KRH75956	Soybean	cytosol, peroxisome, plasma membrane, plastid	25.6	37.3

Protein Annotations

KEGG:00030+2.2.1.1	KEGG:00710+2.2.1.1	KEGG:00730+2.2.1.7	KEGG:00900+2.2.1.7	MapMan:1.2.7	EntrezGene:102588555
Gene3D:3.40.50.920	Gene3D:3.40.50.970	MapMan:3.9.2.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004802
GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	InterPro:IPR009014	UniProt:M1A9Z4	PFAM:PF00456
PFAM:PF02779	PFAM:PF02780	EnsemblPlantsGene:PGSC0003DMG400007019	PGSC:PGSC0003DMG400007019	EnsemblPlants:PGSC0003DMT400018062	ScanProsite:PS00801
ScanProsite:PS00802	PANTHER:PTHR43522	PANTHER:PTHR43522:SF7	SMART:SM00861	SUPFAM:SSF52518	SUPFAM:SSF52922
InterPro:THDP-binding	TIGRFAMs:TIGR00232	InterPro:Transketo_C/PFOR_II	InterPro:Transketolase-like_Pyr-bd	InterPro:Transketolase_BS	InterPro:Transketolase_C
InterPro:Transketolase_N	InterPro:Transketolase_bac-like	InterPro:Transketolase_fam	UniParc:UPI000296AFA9	RefSeq:XP_006345515.1	SEG:seg

Description

Transketolase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400007019]

Coordinates

chr5:+:45542432..45546742

Molecular Weight (calculated)

80213.9 Da

IEP (calculated)

6.667

GRAVY (calculated)

-0.203

Length

746 amino acids

Sequence
(BLAST)

001: MASSSSLTLS QAILSRSVSR HGSSSSTNSQ LSPSSLSLPT FSGLKSTTAT SFRRHILPSA AASGRHSAIR ASAAVETLEK TDNALVEKSV NTIRFLAIDA
101: VEKANSGHPG LPMGCAPMGH ILYDEIMRYN PKNPYWFNRD RFVLSAGHGC MLQYALLHLA GYDAVREEDL KSFRQWGSKT PGHPENFETP GVEVTTGPLG
201: QGIANAVGLA LSEKHLAARF NKPDAEIVDH YTYCIVGDGC QMEGISQEAA SLAGHWGLGK LIAFYDDNHI SIDGDTEIAF TEDVAARYEA LGWHVIWVKN
301: GNTGYDEIRA AIKEAKAVTD KPTLIKVTTT IGFGSPNKSN SYSVHGSALG AKEVEATRQN LGWPYEPFHV PEEVKSHWSR HVPEGAALEA GWNSKFAEYE
401: KKYPEEAADL KSIITGELPA DWEKALPTYT PESPADATRN LSQQNLNALA KVLPGFLGGS ADLASSNMTL MKMFGDFQKS TPEERNIRFG VREHGMGAIC
501: NGIALHSPGL IPYCATFFVF TDYMRAAIRI SALAESRVIY VMTHDSIGLG EDGPTHQPIE HLASFRAMPN VLMLRPADGN ETAGAYRVAI LKSKTPSILA
601: LSRQKLPQLA GTSIEGTAKG GYTISDNSSG NKPDVILIGT GSELEIAVKA ADELRKEGKA VRVVSFVSWE LFDEQSAEYK ESVLPAAVTA RVSIEAGTTF
701: GWAKIVGSKG KAIGIDRFGA SAPAGKIYKE FGITAEAVIA AAKQVS

Best Arabidopsis Sequence Match ( AT2G45290.2 )
(BLAST)

001: MASTSSLALS QALLTRAISH NGSENCVSIP AFSALKSTSP RTSGTISSRR RNASTISHSL RPLVRAAAVE AIVTSSDSSL VDKSVNTIRF LAIDAVEKAK
101: SGHPGLPMGC APMSHILYDE VMKYNPKNPY WFNRDRFVLS AGHGCMLQYA LLHLAGYDSV REEDLKSFRQ WGSKTPGHPE NFETPGVEAT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDN EIVDHYTYSI LGDGCQMEGI SNEVCSLAGH WGLGKLIAFY DDNHISIDGD TDIAFTESVD KRFEALGWHV IWVKNGNNGY
301: DEIRAAIREA KAVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFHVPEDVK SHWSRHTPEG AALEADWNAK FAAYEKKYPE
401: EAAELKSIIS GELPVGWEKA LPTYTPDSPG DATRNLSQQC LNALAKAVPG FLGGSADLAS SNMTMLKAFG NFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGFIPYCA TFFVFTDYMR AAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHLSSF RAMPNIMMFR PADGNETAGA YKIAVTKRKT PSVLALSRQK
601: LPQLPGTSIE SVEKGGYTIS DNSTGNKPDV ILIGTGSELE IAAQAAEKLR EQGKSVRVVS FVCWELFDEQ SDAYKESVLP SDVSARVSIE AGSTFGWGKI
701: VGGKGKSIGI DTFGASAPAG KLYKEFGITI EAMVEAAKSL I

Arabidopsis Description

TKL-2Transketolase-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IW47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.