Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear, plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22160430
golgi: 23128297 unclear: 25769308 |
msms PMID:
22160430
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G325600.1 | Wheat | cytosol | 96.06 | 93.85 |
| HORVU1Hr1G075560.1 | Barley | cytosol | 89.76 | 93.44 |
| Zm00001d038652_P003 | Maize | cytosol | 74.02 | 73.44 |
| OQU78269 | Sorghum | cytosol | 69.29 | 69.84 |
| TraesCS1B01G339000.1 | Wheat | cytosol | 56.69 | 61.02 |
| Bra036335.1-P | Field mustard | cytosol | 54.33 | 58.97 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 52.76 | 58.77 |
| AT5G42980.1 | Thale cress | cytosol | 54.33 | 58.47 |
| AT1G45145.1 | Thale cress | cytosol | 53.54 | 57.63 |
| CDY36029 | Canola | cytosol | 53.54 | 57.63 |
| CDY53958 | Canola | cytosol | 52.76 | 57.27 |
| Bra014037.1-P | Field mustard | cytosol | 52.76 | 56.78 |
| VIT_18s0001g13250.t01 | Wine grape | cytosol | 50.39 | 56.14 |
| TraesCS2B01G260500.1 | Wheat | extracellular | 41.73 | 55.79 |
| CDY39355 | Canola | cytosol | 51.97 | 55.46 |
| AT1G19730.1 | Thale cress | cytosol | 51.97 | 55.46 |
| Bra025762.1-P | Field mustard | cytosol | 51.97 | 55.46 |
| CDY29406 | Canola | cytosol | 51.97 | 55.46 |
| Solyc04g080850.2.1 | Tomato | extracellular | 53.54 | 55.28 |
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 51.97 | 55.0 |
| KRH51778 | Soybean | endoplasmic reticulum | 49.61 | 53.85 |
| PGSC0003DMT400009623 | Potato | cytosol | 51.97 | 53.66 |
| KRH61100 | Soybean | cytosol | 48.82 | 52.99 |
| CDY43592 | Canola | cytosol | 51.18 | 52.85 |
| Bra027469.1-P | Field mustard | cytosol | 51.18 | 52.85 |
| CDY32970 | Canola | cytosol | 51.18 | 52.85 |
| KRH28739 | Soybean | cytosol | 49.61 | 52.5 |
| KRH05879 | Soybean | endoplasmic reticulum | 50.39 | 52.03 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 46.46 | 51.3 |
| KRH15131 | Soybean | cytosol, nucleus | 48.03 | 51.26 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 44.88 | 50.0 |
| Solyc02g084710.2.1 | Tomato | extracellular | 45.67 | 49.15 |
| PGSC0003DMT400009306 | Potato | cytosol | 45.67 | 49.15 |
| TraesCS5B01G452700.1 | Wheat | cytosol, golgi, unclear | 43.31 | 41.98 |
| VIT_18s0001g13240.t01 | Wine grape | cytosol | 48.03 | 38.61 |
| TraesCS1B01G132600.1 | Wheat | cytosol | 38.58 | 37.4 |
| TraesCS1B01G311300.1 | Wheat | cytosol | 35.43 | 31.47 |
| TraesCS2B01G505100.1 | Wheat | cytosol | 28.35 | 25.9 |
| TraesCS3B01G453600.1 | Wheat | plastid | 32.28 | 21.69 |
Protein Annotations
| MapMan:10.6.1 | MapMan:18.7.2 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006662 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0019725 | GO:GO:0045454 |
| InterPro:IPR013766 | PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 |
| PANTHER:PTHR10438 | PANTHER:PTHR10438:SF293 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS |
| InterPro:Thioredoxin_domain | EnsemblPlantsGene:TraesCS1B01G338800 | EnsemblPlants:TraesCS1B01G338800.1 | TIGR:cd02947 | SEG:seg | : |
Description
No Description!
Coordinates
chr1B:+:566685243..566687535
Molecular Weight (calculated)
13524.5 Da
IEP (calculated)
4.879
GRAVY (calculated)
0.347
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASAATATA TAAAVGAGEV ISVHSLEQWT MQIEEANAAK KLVVIDFTAS WCGPCRIMAP IFADLAKKFP AAVFLKVDVD ELKPIAEQFS VEAMPTFLFM
101: KEGDVKDRVV GAIKEELTTK VGLHAAQ
101: KEGDVKDRVV GAIKEELTTK VGLHAAQ
001: MAGEGEVIAC HTLEVWNEKV KDANESKKLI VIDFTASWCP PCRFIAPVFA EMAKKFTNVV FFKIDVDELQ AVAQEFKVEA MPTFVFMKEG NIIDRVVGAA
101: KDEINEKLMK HGGLVASA
101: KDEINEKLMK HGGLVASA
Arabidopsis Description
TRX5Thioredoxin H5 [Source:UniProtKB/Swiss-Prot;Acc:Q39241]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.