Factsheet for TraesCS6B01G197100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 16595579
plastid: 18419817
plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52960.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G158500.1	Wheat	plastid	99.11	99.11
TraesCS6A01G169100.1	Wheat	plastid	97.79	97.79
HORVU6Hr1G034620.1	Barley	plastid	93.81	93.81
Os02t0192700-02	Rice	plastid	81.86	82.22
EES06437	Sorghum	plastid	79.2	77.49
KRH67837	Soybean	cytosol	44.25	74.63
Bra006963.1-P	Field mustard	plastid	57.08	74.14
CDY68640	Canola	plastid	50.88	70.12
TraesCS7B01G296300.1	Wheat	plastid	70.8	69.87
GSMUA_Achr10P...	Banana	plastid	66.37	65.22
CDX78138	Canola	plastid	62.39	61.3
KRG96122	Soybean	nucleus	57.96	60.93
CDX73586	Canola	plastid	60.62	59.57
TraesCS3B01G304100.1	Wheat	cytosol	42.04	58.64
Bra019637.1-P	Field mustard	plastid	57.96	57.21
AT3G52960.1	Thale cress	plastid	58.85	56.84
CDX76246	Canola	plastid	57.52	56.77
GSMUA_Achr5P15910_001	Banana	plastid	60.18	56.67
PGSC0003DMT400072641	Potato	mitochondrion, plastid	56.64	56.39
Solyc10g083650.1.1	Tomato	plastid	56.19	55.7
VIT_08s0007g03970.t01	Wine grape	plastid	55.75	55.02
PGSC0003DMT400007049	Potato	cytosol, plastid	54.87	53.22
TraesCS3B01G213200.2	Wheat	mitochondrion	24.34	28.5

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766
PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF15	InterPro:Redoxin
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS6B01G197100	EnsemblPlants:TraesCS6B01G197100.1	TIGR:cd03013
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:233693992..233694672

Molecular Weight (calculated)

23261.0 Da

IEP (calculated)

8.206

GRAVY (calculated)

0.230

Length

226 amino acids

Sequence
(BLAST)

001: MATASISALS SAAAAAGKRF VLSSPSLSFA SRRIAGPARL RAAAVPGARR FAASAASAST VVATIAVGDK LPDATLSYFD PADGELKTVT VGELTAGKKV
101: VLFAVPGAFT PTCSQKHLPG FIEKAGELRA KGVDTVACVS VNDAFVMKAW KESLGLGEDV QLLSDGNLEL TRALGVEMDL SDKPMGLGVR SRRYALLADD
201: GVVKVLNLEE GGAFTTSSAE EMLKAL

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.