CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
peroxisome 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67837	Soybean	cytosol	56.28	90.3
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	56.28	73.33
Bra006963.1-P	Field mustard	plastid	58.14	71.84
CDY68640	Canola	plastid	53.02	69.51
VIT_08s0007g03970.t01	Wine grape	plastid	64.65	60.7
GSMUA_Achr10P...	Banana	plastid	64.19	60.0
Solyc10g083650.1.1	Tomato	plastid	63.26	59.65
TraesCS6B01G197100.1	Wheat	plastid	60.93	57.96
TraesCS6D01G158500.1	Wheat	plastid	60.93	57.96
HORVU6Hr1G034620.1	Barley	plastid	60.93	57.96
Os02t0192700-02	Rice	plastid	60.47	57.78
PGSC0003DMT400072641	Potato	mitochondrion, plastid	60.93	57.71
TraesCS6A01G169100.1	Wheat	plastid	60.47	57.52
CDX76246	Canola	plastid	60.93	57.21
Bra019637.1-P	Field mustard	plastid	60.93	57.21
CDX73586	Canola	plastid	60.47	56.52
AT3G52960.1	Thale cress	plastid	61.4	56.41
TraesCS7B01G296300.1	Wheat	plastid	60.0	56.33
EES06437	Sorghum	plastid	60.47	56.28
GSMUA_Achr5P15910_001	Banana	plastid	62.33	55.83
PGSC0003DMT400007049	Potato	cytosol, plastid	60.47	55.79
TraesCS7A01G394300.1	Wheat	plastid	59.53	55.65
CDX78138	Canola	plastid	59.53	55.65
TraesCS7D01G389700.1	Wheat	plastid	59.07	55.22
Zm00001d046682_P001	Maize	plastid	59.53	54.94
Os06t0625500-01	Rice	plastid	58.6	54.31
KRH48355	Soybean	endoplasmic reticulum, nucleus	40.47	53.7
KXG20408	Sorghum	plastid	58.14	53.65
KRH39322	Soybean	endoplasmic reticulum, nucleus	40.0	53.09
KRH48905	Soybean	cytosol	15.81	43.59
KRH11396	Soybean	cytosol	20.93	31.69
KRH20883	Soybean	mitochondrion	27.44	30.1
KRH20884	Soybean	mitochondrion	27.44	29.95
KRH11395	Soybean	nucleus	27.44	29.95
TraesCSU01G031500.1	Wheat	mitochondrion, plastid	31.16	25.87

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	EntrezGene:100783307	Gene3D:3.40.30.10	EMBL:ACUP02012146	EnsemblPlantsGene:GLYMA_19G190800
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	UniProt:I1NAI6
InterPro:IPR013766	EnsemblPlants:KRG96122	ProteinID:KRG96122	ProteinID:KRG96122.1	ProteinID:KRG96123.1	PFAM:PF08534
InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF29	InterPro:Redoxin	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001BA8205	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:44829090..44830615

Molecular Weight (calculated)

22984.7 Da

IEP (calculated)

8.215

GRAVY (calculated)

0.082

Length

215 amino acids

Sequence
(BLAST)

001: MAASITLSRL VSSTLTTASF FPPITLPSKL SSLRLPTRRH PKPLRFSSST ITATISVGDK LPEATFSYLD SSGEVQTTTV SELTKGKKAV LFAVPGAFTP
101: TCSQKHVPGF VEKSGELRAK GIDTIACISV NDAFVMKAWK EDLKVNEEVL LLSDGNGTFT KAIGVELDLS DKPVGLGVRS RRYALLAEDG VVKLFNLEEG
201: GAFTFSGAQD ILDVL

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.