CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20884	Soybean	mitochondrion	98.48	98.48
Solyc01g079820.2.1	Tomato	extracellular	70.56	73.16
PGSC0003DMT400023223	Potato	extracellular	70.56	73.16
TraesCS3A01G183500.1	Wheat	mitochondrion	71.07	72.92
VIT_05s0020g02850.t01	Wine grape	mitochondrion	74.11	72.64
HORVU3Hr1G037720.1	Barley	mitochondrion	70.56	72.02
TraesCS3D01G187600.2	Wheat	mitochondrion	70.05	71.5
KRH20883	Soybean	mitochondrion	70.56	70.92
TraesCS3B01G213200.2	Wheat	mitochondrion	69.04	70.47
Zm00001d040341_P001	Maize	mitochondrion	68.53	69.95
AT3G06050.1	Thale cress	mitochondrion	71.07	69.65
CDY05226	Canola	mitochondrion	71.07	69.65
OQU86665	Sorghum	mitochondrion	68.02	69.43
Bra020782.1-P	Field mustard	mitochondrion	70.56	69.15
CDY27714	Canola	mitochondrion	70.56	69.15
Os01t0266600-01	Rice	mitochondrion	68.53	68.18
GSMUA_Achr8P09520_001	Banana	mitochondrion	68.02	68.02
KRH11396	Soybean	cytosol	48.73	67.61
KRH67837	Soybean	cytosol	22.34	32.84
KRH48355	Soybean	endoplasmic reticulum, nucleus	26.4	32.1
KRH39322	Soybean	endoplasmic reticulum, nucleus	26.4	32.1
KRH48905	Soybean	cytosol	12.18	30.77
KRG96122	Soybean	nucleus	29.95	27.44

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	UniProt:A0A0R4J5B9	EMBL:ACUP02009208	EnsemblPlantsGene:GLYMA_15G105600
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766
EnsemblPlants:KRH11395	ProteinID:KRH11395	ProteinID:KRH11395.1	PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352
PANTHER:PTHR10430	PANTHER:PTHR10430:SF16	InterPro:Redoxin	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI00019AA960	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:8275573..8277692

Molecular Weight (calculated)

21154.3 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.066

Length

197 amino acids

Sequence
(BLAST)

001: MASVMVNRGG SRIIKSVSAA LGTRFFAKVA TGTDIVSAAP NASLQKARTW DEGLASKFST TPLKDIFKDK KVVIFGLPGA YTGVCSNKHV PPYKENIDKF
101: KAKGIDSVIC VAINDPYTMN AWAEKLQAKD AIEFYGDFDG SFHKSLELVT DLSGALLGTR SERWSAYVVD GKVKALNVEE APSDVKVSGA DTILGQI

Best Arabidopsis Sequence Match ( AT3G06050.1 )
(BLAST)

001: MAMSILKLRN LSALRSAANS ARIGVSSRGF SKLAEGTDIT SAAPGVSLQK ARSWDEGVSS KFSTTPLSDI FKGKKVVIFG LPGAYTGVCS QQHVPSYKSH
101: IDKFKAKGID SVICVSVNDP FAINGWAEKL GAKDAIEFYG DFDGKFHKSL GLDKDLSAAL LGPRSERWSA YVEDGKVKAV NVEEAPSDFK VTGAEVILGQ
201: I

Arabidopsis Description

PRXIIFPRXIIF [Source:UniProtKB/TrEMBL;Acc:A0A178VBA5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.