Factsheet for VIT_05s0020g02850.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20884	Soybean	mitochondrion	74.13	75.63
PGSC0003DMT400023223	Potato	extracellular	70.15	74.21
Solyc01g079820.2.1	Tomato	extracellular	70.15	74.21
KRH11395	Soybean	nucleus	72.64	74.11
TraesCS3A01G183500.1	Wheat	mitochondrion	68.16	71.35
GSMUA_Achr8P09520_001	Banana	mitochondrion	69.65	71.07
TraesCS3D01G187600.2	Wheat	mitochondrion	68.16	70.98
HORVU3Hr1G037720.1	Barley	mitochondrion	68.16	70.98
Zm00001d040341_P001	Maize	mitochondrion	67.66	70.47
OQU86665	Sorghum	mitochondrion	67.66	70.47
CDY05226	Canola	mitochondrion	70.15	70.15
TraesCS3B01G213200.2	Wheat	mitochondrion	67.16	69.95
Bra020782.1-P	Field mustard	mitochondrion	69.65	69.65
CDY27714	Canola	mitochondrion	69.65	69.65
AT3G06050.1	Thale cress	mitochondrion	69.65	69.65
Os01t0266600-01	Rice	mitochondrion	68.16	69.19
VIT_11s0016g03630.t01	Wine grape	cytosol	28.36	35.19
VIT_09s0002g03290.t01	Wine grape	cytosol, extracellular, peroxisome	7.46	26.79
VIT_08s0007g03970.t01	Wine grape	plastid	26.87	23.58

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	EntrezGene:100245908	wikigene:100245908	Gene3D:3.40.30.10	ProteinID:AEL16463
ProteinID:AEL16463.1	ProteinID:CBI26201	ProteinID:CBI26201.3	UniProt:D7T6T0	EMBL:FN595749	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114
GO:GO:0098869	InterPro:IPR013766	EMBL:JN392724	EntrezGene:LOC100245908	wikigene:LOC100245908	RefSeq:NP_001268077.1
PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF16	InterPro:Redoxin
SUPFAM:SSF52833	TIGR:TC52205	TIGR:TC58425	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00015C8277
ArrayExpress:VIT_05s0020g02850	EnsemblPlantsGene:VIT_05s0020g02850	EnsemblPlants:VIT_05s0020g02850.t01	SEG:seg	:	:

Description

Type II peroxiredoxin F [Source:UniProtKB/TrEMBL;Acc:D7T6T0]

Coordinates

chr5:+:4540106..4546285

Molecular Weight (calculated)

21826.2 Da

IEP (calculated)

9.013

GRAVY (calculated)

-0.062

Length

201 amino acids

Sequence
(BLAST)

001: MASRILKRSM MMKSTVESLR IAAAAASRHY ASVAVGTDLV SAAPDVRLQK ARTWDEGVSS KFSTTPLKEL FKDKKVVIFG LPGAYTGVCS AQHVPSYKKN
101: VDKFKAKGID SVICVAVNDP YTLNAWAEKL EAKDAIEFYG DFDGSFHKSL DLEVDLSAAL LGPRSHRWSA YVVDGKVKAL NIESAPSEVK VSGADVILEQ
201: I

Best Arabidopsis Sequence Match ( AT3G06050.1 )
(BLAST)

001: MAMSILKLRN LSALRSAANS ARIGVSSRGF SKLAEGTDIT SAAPGVSLQK ARSWDEGVSS KFSTTPLSDI FKGKKVVIFG LPGAYTGVCS QQHVPSYKSH
101: IDKFKAKGID SVICVSVNDP FAINGWAEKL GAKDAIEFYG DFDGKFHKSL GLDKDLSAAL LGPRSERWSA YVEDGKVKAV NVEEAPSDFK VTGAEVILGQ
201: I

Arabidopsis Description

PRXIIFPRXIIF [Source:UniProtKB/TrEMBL;Acc:A0A178VBA5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.