Factsheet for VIT_08s0007g03970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
mitochondrion 3
cytosol 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67837	Soybean	cytosol	47.16	80.6
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	51.09	70.91
Bra006963.1-P	Field mustard	plastid	51.97	68.39
CDY68640	Canola	plastid	46.72	65.24
KRG96122	Soybean	nucleus	60.7	64.65
Solyc10g083650.1.1	Tomato	plastid	62.01	62.28
PGSC0003DMT400072641	Potato	mitochondrion, plastid	61.57	62.11
VIT_09s0002g03290.t01	Wine grape	cytosol, extracellular, peroxisome	14.85	60.71
GSMUA_Achr10P...	Banana	plastid	59.83	59.57
HORVU6Hr1G034620.1	Barley	plastid	57.21	57.96
PGSC0003DMT400007049	Potato	cytosol, plastid	58.08	57.08
VIT_11s0016g03630.t01	Wine grape	cytosol	39.74	56.17
Bra019637.1-P	Field mustard	plastid	55.9	55.9
EES06437	Sorghum	plastid	56.33	55.84
TraesCS6D01G158500.1	Wheat	plastid	55.02	55.75
TraesCS6B01G197100.1	Wheat	plastid	55.02	55.75
TraesCS6A01G169100.1	Wheat	plastid	55.02	55.75
CDX76246	Canola	plastid	55.46	55.46
TraesCS7B01G296300.1	Wheat	plastid	55.46	55.46
CDX73586	Canola	plastid	55.46	55.22
TraesCS7D01G389700.1	Wheat	plastid	55.02	54.78
TraesCS7A01G394300.1	Wheat	plastid	55.02	54.78
CDX78138	Canola	plastid	54.59	54.35
Os02t0192700-02	Rice	plastid	53.28	54.22
KXG20408	Sorghum	plastid	55.02	54.08
Os06t0625500-01	Rice	plastid	54.59	53.88
Zm00001d046682_P001	Maize	plastid	54.15	53.22
AT3G52960.1	Thale cress	plastid	54.15	52.99
GSMUA_Achr5P15910_001	Banana	plastid	54.59	52.08
TraesCSU01G031500.1	Wheat	mitochondrion, plastid	30.57	27.03
VIT_05s0020g02850.t01	Wine grape	mitochondrion	23.58	26.87

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	EntrezGene:100264932	wikigene:100264932	Gene3D:3.40.30.10	ProteinID:AEL16462
ProteinID:AEL16462.1	ProteinID:CCB55394	ProteinID:CCB55394.1	UniProt:F6HKH2	EMBL:FN595991	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0051920	GO:GO:0055114
GO:GO:0098869	InterPro:IPR013766	EMBL:JN392723	EntrezGene:LOC100264932	wikigene:LOC100264932	PFAM:PF08534
InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF29	InterPro:Redoxin	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002109E47	ArrayExpress:VIT_08s0007g03970	EnsemblPlantsGene:VIT_08s0007g03970	EnsemblPlants:VIT_08s0007g03970.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:17991838..17993627

Molecular Weight (calculated)

24461.5 Da

IEP (calculated)

8.059

GRAVY (calculated)

0.091

Length

229 amino acids

Sequence
(BLAST)

001: MATTLTMARL LSSAKSLSFS SSASALFPPA SLSLKLRHPK PLRFSTAISA TIAVGDKLPE STFSYFDSAG ELQTTTVSDL TKGKKAILFA VPGAFTPTCS
101: QKHLPGFVEK SGELKSKGVE TIACISVNDA FVMKAWKADL KIEDQVLLLS DGNGDFTKAI GCELDLSDKP VGLGVRSRRY AMLVDDGVVK VLNLEEGGAF
201: TFSGLFLGFV ISGLEDHKGN SKYWPVVQE

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.