Factsheet for PGSC0003DMT400072641

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 10
peroxisome 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083650.1.1	Tomato	plastid	93.39	92.98
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	55.07	75.76
KRH67837	Soybean	cytosol	42.73	72.39
Bra006963.1-P	Field mustard	plastid	54.19	70.69
PGSC0003DMT400007049	Potato	cytosol, plastid	70.04	68.24
CDY68640	Canola	plastid	48.9	67.68
PGSC0003DMT400013068	Potato	extracellular	44.93	62.96
VIT_08s0007g03970.t01	Wine grape	plastid	62.11	61.57
KRG96122	Soybean	nucleus	57.71	60.93
GSMUA_Achr10P...	Banana	plastid	59.91	59.13
TraesCS7B01G296300.1	Wheat	plastid	58.59	58.08
HORVU6Hr1G034620.1	Barley	plastid	57.71	57.96
TraesCS7A01G394300.1	Wheat	plastid	58.15	57.39
Os02t0192700-02	Rice	plastid	56.39	56.89
TraesCS6B01G197100.1	Wheat	plastid	56.39	56.64
TraesCS6D01G158500.1	Wheat	plastid	56.39	56.64
CDX78138	Canola	plastid	57.27	56.52
CDX73586	Canola	plastid	57.27	56.52
TraesCS7D01G389700.1	Wheat	plastid	57.27	56.52
TraesCS6A01G169100.1	Wheat	plastid	55.95	56.19
AT3G52960.1	Thale cress	plastid	57.71	55.98
Bra019637.1-P	Field mustard	plastid	56.39	55.9
CDX76246	Canola	plastid	55.95	55.46
EES06437	Sorghum	plastid	56.39	55.41
Zm00001d046682_P001	Maize	plastid	55.95	54.51
Os06t0625500-01	Rice	plastid	55.51	54.31
KXG20408	Sorghum	plastid	54.63	53.22
GSMUA_Achr5P15910_001	Banana	plastid	55.51	52.5
PGSC0003DMT400023223	Potato	extracellular	26.87	32.11
TraesCSU01G031500.1	Wheat	mitochondrion, plastid	29.07	25.48

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	EntrezGene:102596361	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M1CQQ1	PFAM:PF08534
EnsemblPlantsGene:PGSC0003DMG400028266	PGSC:PGSC0003DMG400028266	EnsemblPlants:PGSC0003DMT400072641	InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430
PANTHER:PTHR10430:SF29	InterPro:Redoxin	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000295A996
RefSeq:XP_006339113.1	SEG:seg	:	:	:	:

Description

Peroxiredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400028266]

Coordinates

chr10:+:55503389..55504361

Molecular Weight (calculated)

24414.4 Da

IEP (calculated)

8.801

GRAVY (calculated)

0.007

Length

227 amino acids

Sequence
(BLAST)

001: MAATTAAMFT LPKLYKSSIN PKTISLFSPK STLSSSFSIS SVPFKVHHSK RNAQPLSYTT PRISAAISVG DKLPNSTLSY FDSSDELKTL SVTDLTSGKK
101: VVLFAVPGAF TPTCSQKHLP GFVEKSKELK SKGVDTIACI SVNDAFVMKA WKENLNIGDE VLLLSDGNLE FTKAIGCELD LTDKPIGLGV RSRRYAMLVD
201: DGVVKVLNLE EGGSFNVSSA EDILKAL

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.