CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52960.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	66.52	93.94
Zm00001d046682_P001	Maize	plastid	80.69	80.69
Os06t0625500-01	Rice	plastid	76.39	76.72
KRH67837	Soybean	cytosol	43.35	75.37
Bra006963.1-P	Field mustard	plastid	55.79	74.71
TraesCS7D01G389700.1	Wheat	plastid	72.53	73.48
TraesCS7B01G296300.1	Wheat	plastid	72.1	73.36
CDY68640	Canola	plastid	51.5	73.17
TraesCS7A01G394300.1	Wheat	plastid	71.67	72.61
EES06437	Sorghum	plastid	65.67	66.23
GSMUA_Achr10P...	Banana	plastid	61.8	62.61
CDX78138	Canola	plastid	59.23	60.0
CDX73586	Canola	plastid	57.94	58.7
KRG96122	Soybean	nucleus	53.65	58.14
Bra019637.1-P	Field mustard	plastid	56.65	57.64
GSMUA_Achr5P15910_001	Banana	plastid	59.23	57.5
CDX76246	Canola	plastid	56.22	57.21
AT3G52960.1	Thale cress	plastid	57.08	56.84
PGSC0003DMT400007049	Potato	cytosol, plastid	55.36	55.36
VIT_08s0007g03970.t01	Wine grape	plastid	54.08	55.02
EES03426	Sorghum	cytosol	38.2	54.94
Solyc10g083650.1.1	Tomato	plastid	53.65	54.82
PGSC0003DMT400072641	Potato	mitochondrion, plastid	53.22	54.63
TraesCSU01G031500.1	Wheat	mitochondrion, plastid	39.91	35.91
OQU86665	Sorghum	mitochondrion	25.75	31.09

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	UniProt:A0A194YKC9	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	EnsemblPlants:KXG20408	ProteinID:KXG20408
ProteinID:KXG20408.1	PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF15
InterPro:Redoxin	EnsemblPlantsGene:SORBI_3010G197200	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0007F1C751
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:54033299..54034513

Molecular Weight (calculated)

23752.6 Da

IEP (calculated)

8.728

GRAVY (calculated)

0.270

Length

233 amino acids

Sequence
(BLAST)

001: MATSALVALS ATTAAAAAGK RILLSRPTAA ASSLSFASRR LAAAAGPLRG LLGAPIRAVA SSASAPPKTI AVGDRLPDAT LSYFDTSSPD GELKTVTVRD
101: LTAGKKVVLF AVPGAFTPTC TQKHLPGFVA KAGELRAKGV DAVACVSVND AFVMRAWKES LGIGDEVLLL SDGNGELARA MGVELDLSDK PVGLGVRSRR
201: YALLAEDGVV KVLNLEEGGA FTNSSAEDML SAL

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.