CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52960.1	CDY32970	AT5G42980.1	15352244
AT3G52960.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019637.1-P	Field mustard	plastid	98.69	98.69
CDY68640	Canola	plastid	65.07	90.85
CDX78138	Canola	plastid	84.72	84.35
CDX73586	Canola	plastid	83.41	83.04
AT3G52960.1	Thale cress	plastid	81.66	79.91
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	55.9	77.58
KRH67837	Soybean	cytosol	42.36	72.39
KRG96122	Soybean	nucleus	57.21	60.93
CDY16429	Canola	cytosol	41.92	59.26
TraesCS7B01G296300.1	Wheat	plastid	58.95	58.95
GSMUA_Achr10P...	Banana	plastid	58.95	58.7
HORVU6Hr1G034620.1	Barley	plastid	57.21	57.96
TraesCS7A01G394300.1	Wheat	plastid	58.08	57.83
TraesCS6D01G158500.1	Wheat	plastid	56.77	57.52
TraesCS6B01G197100.1	Wheat	plastid	56.77	57.52
TraesCS6A01G169100.1	Wheat	plastid	56.77	57.52
CDY39257	Canola	cytosol	40.61	57.41
CDY07475	Canola	cytosol	40.61	57.41
TraesCS7D01G389700.1	Wheat	plastid	57.21	56.96
Os06t0625500-01	Rice	plastid	57.21	56.47
Os02t0192700-02	Rice	plastid	55.46	56.44
EES06437	Sorghum	plastid	56.77	56.28
KXG20408	Sorghum	plastid	57.21	56.22
PGSC0003DMT400072641	Potato	mitochondrion, plastid	55.46	55.95
Zm00001d046682_P001	Maize	plastid	56.77	55.79
Solyc10g083650.1.1	Tomato	plastid	55.46	55.7
VIT_08s0007g03970.t01	Wine grape	plastid	55.46	55.46
PGSC0003DMT400007049	Potato	cytosol, plastid	55.9	54.94
CDX75114	Canola	cytosol	37.99	53.7
CDY66099	Canola	cytosol	37.99	53.7
GSMUA_Achr5P15910_001	Banana	plastid	55.46	52.92
CDY60867	Canola	plastid	44.1	49.03
CDY27714	Canola	mitochondrion	24.02	27.36
TraesCSU01G031500.1	Wheat	mitochondrion, plastid	30.13	26.64
CDY05226	Canola	mitochondrion	23.14	26.37

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	GO:A0A078CGC0	EnsemblPlants:CDX76246	ProteinID:CDX76246
ProteinID:CDX76246.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00126582001	InterPro:IPR013766	PFAM:PF08534
InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF29	InterPro:Redoxin	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0004EED941	SEG:seg	:	:

Description

BnaA04g05100D

Coordinates

chrLK031806:-:2118831..2119812

Molecular Weight (calculated)

24185.9 Da

IEP (calculated)

9.194

GRAVY (calculated)

0.041

Length

229 amino acids

Sequence
(BLAST)

001: MATSISVSRL LSSSSSVAKP LRSPTSAFTA PLSFTRSLAP NLSLKFNTRR SSSVSTTRSF ATTITSAISV GDKLPDSTLS YLDPTTNDVK TVTVSSLTAG
101: KKTILFAVPG AFTPTCSQKH VPGFVSQAAE LRSKGVDVIA CVSVNDAFVM EAWRKDLGVN DEVMLLSDGN GEFTGKLGVE LDLRDKPVGL GVRSRRYAIL
201: AEDGVVKVLN LEEGGAFTNS SAEDMLKAL

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.