CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16429	Canola	cytosol	77.18	98.15
AT1G65980.1	Thale cress	cytosol	75.24	95.68
CDY07475	Canola	cytosol	74.76	95.06
CDY39257	Canola	cytosol	74.76	95.06
AT1G65970.1	Thale cress	cytosol	72.82	92.59
AT1G60740.1	Thale cress	cytosol	71.84	91.36
PGSC0003DMT400013068	Potato	extracellular	64.08	81.48
CDX75114	Canola	cytosol	63.59	80.86
CDY66099	Canola	cytosol	63.59	80.86
Solyc07g020860.2.1	Tomato	plastid	63.11	80.25
VIT_11s0016g03630.t01	Wine grape	cytosol	62.62	79.63
Zm00001d011581_P001	Maize	plastid	62.14	79.01
EES03426	Sorghum	cytosol	62.14	79.01
KRH48355	Soybean	endoplasmic reticulum, nucleus	61.16	77.78
TraesCS3B01G304100.1	Wheat	cytosol	60.68	77.16
KRH39322	Soybean	endoplasmic reticulum, nucleus	60.19	76.54
TraesCS3A01G270300.1	Wheat	cytosol	60.19	76.54
TraesCS3D01G270100.1	Wheat	cytosol	59.71	75.93
Os01t0675100-01	Rice	extracellular, plasma membrane, plastid	59.22	75.31
GSMUA_Achr10P...	Banana	extracellular	44.17	75.21
KRH48905	Soybean	cytosol	24.76	65.38
HORVU3Hr1G062040.1	Barley	mitochondrion	61.65	61.06
CDY68640	Canola	plastid	45.63	57.32
CDX78138	Canola	plastid	49.51	44.35
CDX76246	Canola	plastid	49.03	44.1
CDX73586	Canola	plastid	49.03	43.91
CDY27714	Canola	mitochondrion	25.24	25.87
CDY05226	Canola	mitochondrion	24.76	25.37

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	GO:A0A078J9T0	UniProt:A0A078J9T0	EnsemblPlants:CDY60867
ProteinID:CDY60867	ProteinID:CDY60867.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00030155001	InterPro:IPR013766	PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352
PANTHER:PTHR10430	PANTHER:PTHR10430:SF8	InterPro:Redoxin	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0004EDC427	SEG:seg	:	:	:	:

Description

BnaCnng36960DBnaCnng36960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9T0]

Coordinates

chrLK033924:+:12276..13453

Molecular Weight (calculated)

22158.7 Da

IEP (calculated)

5.726

GRAVY (calculated)

0.146

Length

206 amino acids

Sequence
(BLAST)

001: MGTLTIQTPI YSFSLKSNSS DSVSLSLPTK LFILFCASFP PTSSMAPIAV GDVVPEGSIS FFDENDQLQT VSVHSLAAGK KVILFGVPGA FTPTCSMKHV
101: PGFIEKAEEL KSKGVDEIIC FSVNDPFVMK AWGKTYPENK HVKFVADGSG EYTKLLGLEL DLKDKGLGVR SRRFALLIDN LKVTVANVES GGEFTISSAD
201: DILKAL

Best Arabidopsis Sequence Match ( AT1G65980.1 )
(BLAST)

001: MAPIAVGDVV PDGTISFFDE NDQLQTASVH SLAAGKKVIL FGVPGAFTPT CSMKHVPGFI EKAEELKSKG VDEIICFSVN DPFVMKAWGK TYPENKHVKF
101: VADGSGEYTH LLGLELDLKD KGLGVRSRRF ALLLDDLKVT VANVESGGEF TVSSADDILK AL

Arabidopsis Description

PRXIIBPeroxiredoxin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9XEX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.