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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 3
  • peroxisome 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, peroxisome
BaCelLo:cytosol
EpiLoc:peroxisome
MultiLoc:peroxisome
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
 extracellular: 28248230
msms PMID: 28248230 doi
E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty
National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g020860.2.1 Tomato plastid 98.15 98.15
AT1G65980.1 Thale cress cytosol 83.95 83.95
VIT_11s0016g03630.t01 Wine grape cytosol 83.33 83.33
Bra039747.1-P Field mustard peroxisome 82.72 82.72
CDY16429 Canola cytosol 82.1 82.1
GSMUA_Achr10P... Banana extracellular 60.49 80.99
Bra004138.1-P Field mustard cytosol 80.25 80.25
CDY07475 Canola cytosol 80.25 80.25
CDY39257 Canola cytosol 80.25 80.25
KRH48355 Soybean endoplasmic reticulum, nucleus 80.25 80.25
AT1G65970.1 Thale cress cytosol 79.63 79.63
KRH39322 Soybean endoplasmic reticulum, nucleus 79.63 79.63
AT1G60740.1 Thale cress cytosol 78.4 78.4
Zm00001d011581_P001 Maize plastid 77.78 77.78
EES03426 Sorghum cytosol 77.16 77.16
TraesCS3A01G270300.1 Wheat cytosol 75.93 75.93
TraesCS3B01G304100.1 Wheat cytosol 75.93 75.93
TraesCS3D01G270100.1 Wheat cytosol 75.93 75.93
Os01t0675100-01 Rice extracellular, plasma membrane, plastid 73.46 73.46
KRH48905 Soybean cytosol 33.95 70.51
CDY66099 Canola cytosol 70.37 70.37
CDX75114 Canola cytosol 70.37 70.37
Bra038378.1-P Field mustard cytosol 70.37 70.37
CDY60867 Canola plastid 81.48 64.08
HORVU3Hr1G062040.1 Barley mitochondrion 74.69 58.17
PGSC0003DMT400072641 Potato mitochondrion, plastid 62.96 44.93
PGSC0003DMT400007049 Potato cytosol, plastid 59.26 41.2
PGSC0003DMT400023223 Potato extracellular 35.19 30.0
Protein Annotations
KEGG:00480+1.11.1.15MapMan:10.4.3.2Gene3D:3.40.30.10ProteinID:ADD60395ProteinID:ADD60395.1GO:GO:0003674
GO:GO:0003824GO:GO:0004601GO:GO:0005575GO:GO:0005623GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016491GO:GO:0019725GO:GO:0045454GO:GO:0055114GO:GO:0098869
EMBL:GQ180105InterPro:IPR013766UniProt:M1A288PFAM:PF08534EnsemblPlantsGene:PGSC0003DMG400005097PGSC:PGSC0003DMG400005097
EnsemblPlants:PGSC0003DMT400013068InterPro:PRX5-likePFscan:PS51352PANTHER:PTHR10430PANTHER:PTHR10430:SF8InterPro:Redoxin
SUPFAM:SSF52833InterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domainUniParc:UPI0002958365::
Description
Thioredoxin peroxidase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400005097]
Coordinates
chr7:-:15434727..15439152
Molecular Weight (calculated)
17470.0 Da
IEP (calculated)
4.998
GRAVY (calculated)
0.016
Length
162 amino acids
Sequence
(BLAST)
001: MAPIAVGDVI PDGTVSYFDE QDQMQTVSVH SLAKGKKVII FAVPGAFTPT CSMKHVPGFI EKADELKSKG VDEILCISVN DPFVMKAWAK TYPENKHVKF
101: LADGAGKYTH ALGLELDLSD KGLGVRSRRY ALLVDDLEVK VANIESGGEF TVSGADEILN AL
Best Arabidopsis Sequence Match ( AT1G65980.1 )
(BLAST)
001: MAPIAVGDVV PDGTISFFDE NDQLQTASVH SLAAGKKVIL FGVPGAFTPT CSMKHVPGFI EKAEELKSKG VDEIICFSVN DPFVMKAWGK TYPENKHVKF
101: VADGSGEYTH LLGLELDLKD KGLGVRSRRF ALLLDDLKVT VANVESGGEF TVSSADDILK AL
Arabidopsis Description
PRXIIBPeroxiredoxin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9XEX2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.