Factsheet for PGSC0003DMT400007049

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 9
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67837	Soybean	cytosol	42.92	74.63
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	51.5	72.73
PGSC0003DMT400072641	Potato	mitochondrion, plastid	68.24	70.04
Bra006963.1-P	Field mustard	plastid	51.93	69.54
CDY68640	Canola	plastid	48.5	68.9
KRG96122	Soybean	nucleus	55.79	60.47
PGSC0003DMT400013068	Potato	extracellular	41.2	59.26
VIT_08s0007g03970.t01	Wine grape	plastid	57.08	58.08
GSMUA_Achr10P...	Banana	plastid	57.08	57.83
AT3G52960.1	Thale cress	plastid	57.51	57.27
CDX73586	Canola	plastid	56.22	56.96
EES06437	Sorghum	plastid	56.22	56.71
CDX78138	Canola	plastid	55.79	56.52
Bra019637.1-P	Field mustard	plastid	55.36	56.33
CDX76246	Canola	plastid	54.94	55.9
HORVU6Hr1G034620.1	Barley	plastid	54.08	55.75
TraesCS7B01G296300.1	Wheat	plastid	54.51	55.46
KXG20408	Sorghum	plastid	55.36	55.36
Os06t0625500-01	Rice	plastid	54.94	55.17
TraesCS6B01G197100.1	Wheat	plastid	53.22	54.87
TraesCS6D01G158500.1	Wheat	plastid	53.22	54.87
Zm00001d046682_P001	Maize	plastid	54.51	54.51
TraesCS6A01G169100.1	Wheat	plastid	52.79	54.42
TraesCS7A01G394300.1	Wheat	plastid	53.65	54.35
TraesCS7D01G389700.1	Wheat	plastid	53.65	54.35
Os02t0192700-02	Rice	plastid	51.93	53.78
GSMUA_Achr5P15910_001	Banana	plastid	52.79	51.25
PGSC0003DMT400023223	Potato	extracellular	27.04	33.16
TraesCSU01G031500.1	Wheat	mitochondrion, plastid	30.04	27.03

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	EntrezGene:102596276	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:M0ZSD5	PFAM:PF08534
EnsemblPlantsGene:PGSC0003DMG401002721	PGSC:PGSC0003DMG401002721	EnsemblPlants:PGSC0003DMT400007049	InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430
PANTHER:PTHR10430:SF29	InterPro:Redoxin	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00029496F9
RefSeq:XP_006341173.1	SEG:seg	:	:	:	:

Description

Peroxiredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG401002721]

Coordinates

chr9:-:3953064..3955006

Molecular Weight (calculated)

24979.3 Da

IEP (calculated)

9.434

GRAVY (calculated)

0.046

Length

233 amino acids

Sequence
(BLAST)

001: MAATTASASF ILSKLLLKPS TPKPLSLLSP IKTNLFSSSS QFSSLPLKLK QPIHHLPSLK YSTSATSRIS ATISVGDRLP NSTFSYFDSS DELKTLSVSD
101: LTAGKKTILF AVPGAFTPTC SQKHLPGFVE KSKKLKAKGV DTIACISVND AFVMKSWKEN LGIGDEVMML SDGNLEFTKA IGCELDLSDK PVGLGVRSRR
201: YSMLVEDGVV KILNLEEGGA FNVSSAEDIL KAI

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.