CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
peroxisome 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52960.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G158500.1	Wheat	plastid	77.92	79.65
TraesCS6B01G197100.1	Wheat	plastid	77.49	79.2
HORVU6Hr1G034620.1	Barley	plastid	77.06	78.76
TraesCS6A01G169100.1	Wheat	plastid	76.62	78.32
Os02t0192700-02	Rice	plastid	76.19	78.22
KRH67837	Soybean	cytosol	43.72	75.37
Bra006963.1-P	Field mustard	plastid	54.98	72.99
CDY68640	Canola	plastid	49.78	70.12
KXG20408	Sorghum	plastid	66.23	65.67
GSMUA_Achr10P...	Banana	plastid	60.61	60.87
KRG96122	Soybean	nucleus	56.28	60.47
CDX78138	Canola	plastid	58.87	59.13
CDX73586	Canola	plastid	58.01	58.26
AT3G52960.1	Thale cress	plastid	58.01	57.27
Bra019637.1-P	Field mustard	plastid	56.71	57.21
Solyc10g083650.1.1	Tomato	plastid	56.28	57.02
EES03426	Sorghum	cytosol	39.83	56.79
CDX76246	Canola	plastid	56.28	56.77
PGSC0003DMT400072641	Potato	mitochondrion, plastid	55.41	56.39
VIT_08s0007g03970.t01	Wine grape	plastid	55.84	56.33
PGSC0003DMT400007049	Potato	cytosol, plastid	56.71	56.22
GSMUA_Achr5P15910_001	Banana	plastid	58.01	55.83
OQU86665	Sorghum	mitochondrion	22.08	26.42

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	EntrezGene:8079458	UniProt:C5XXD7	EnsemblPlants:EES06437
ProteinID:EES06437	ProteinID:EES06437.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	InterPro:IPR013766	PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430
PANTHER:PTHR10430:SF15	InterPro:Redoxin	EnsemblPlantsGene:SORBI_3004G076000	SUPFAM:SSF52833	unigene:Sbi.2436	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0001A85C07	RefSeq:XP_002453461.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:6195752..6196987

Molecular Weight (calculated)

24041.9 Da

IEP (calculated)

9.186

GRAVY (calculated)

0.061

Length

231 amino acids

Sequence
(BLAST)

001: MATTTTTATA SLTTLSPAGV GKRFVLSSPP LSFSSHRLTA GLRHRHRGGA ASRTARRRAA SASPVVATIA VGDKLPDATL SYFDPSDGEL KTVTVAELTA
101: GKKAILFAVP GAFTPTCSQK HLPGFVEKAG ELKAKGVETV ACVSVNDAFV MKAWKEALGL GEDVTLLSDG NLELTRALGV EMDLSDKPVG LGVRSRRYAL
201: LAEDGVVKVL NLEDGGAFTT SSAEEMLKVL G

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.