Factsheet for Bra019637.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
peroxisome 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52960.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76246	Canola	plastid	98.69	98.69
Bra006963.1-P	Field mustard	plastid	69.87	91.95
AT3G52960.1	Thale cress	plastid	81.22	79.49
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	55.9	77.58
KRH67837	Soybean	cytosol	42.79	73.13
KRG96122	Soybean	nucleus	57.21	60.93
Bra039747.1-P	Field mustard	peroxisome	42.79	60.49
GSMUA_Achr10P...	Banana	plastid	59.39	59.13
TraesCS7B01G296300.1	Wheat	plastid	58.52	58.52
HORVU6Hr1G034620.1	Barley	plastid	57.64	58.41
Bra004138.1-P	Field mustard	cytosol	41.05	58.02
TraesCS6A01G169100.1	Wheat	plastid	57.21	57.96
TraesCS6B01G197100.1	Wheat	plastid	57.21	57.96
TraesCS6D01G158500.1	Wheat	plastid	57.21	57.96
TraesCS7A01G394300.1	Wheat	plastid	57.64	57.39
Os06t0625500-01	Rice	plastid	57.64	56.9
Os02t0192700-02	Rice	plastid	55.9	56.89
EES06437	Sorghum	plastid	57.21	56.71
KXG20408	Sorghum	plastid	57.64	56.65
TraesCS7D01G389700.1	Wheat	plastid	56.77	56.52
PGSC0003DMT400072641	Potato	mitochondrion, plastid	55.9	56.39
Zm00001d046682_P001	Maize	plastid	57.21	56.22
Solyc10g083650.1.1	Tomato	plastid	55.9	56.14
VIT_08s0007g03970.t01	Wine grape	plastid	55.9	55.9
PGSC0003DMT400007049	Potato	cytosol, plastid	56.33	55.36
Bra038378.1-P	Field mustard	cytosol	38.43	54.32
GSMUA_Achr5P15910_001	Banana	plastid	55.9	53.33
Bra020782.1-P	Field mustard	mitochondrion	24.02	27.36
TraesCSU01G031500.1	Wheat	mitochondrion, plastid	29.69	26.25

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra019637	EnsemblPlants:Bra019637.1	EnsemblPlants:Bra019637.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766
UniProt:M4DSZ4	PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF29
InterPro:Redoxin	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000253E73F	SEG:seg

Description

AT3G52960 (E=4e-098) | peroxiredoxin type 2, putative

Coordinates

chrA06:+:5373573..5374262

Molecular Weight (calculated)

24184.9 Da

IEP (calculated)

9.572

GRAVY (calculated)

0.026

Length

229 amino acids

Sequence
(BLAST)

001: MATSISVSRL LSSSSSVAKP LRSPTSAFTA PLSFTRSLAP NLSLKFNTRR SSSVSTTRSF ATTINSAISV GDKLPDSTLS YLDPTTNDVK TVTVSSLTAG
101: KKTILFAVPG AFTPTCSQKH VPGFVSKAAE LRSKGVDVIA CVSVNDAFVM EAWRKDLGVN DEVMLLSDGN GEFTGKLGVE LDLRDKPVGL GVRSRRYAVL
201: AEDGVVKVLN LEEGGAFTNS SAEDMLKAL

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.