Factsheet for TraesCSU01G031500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52960.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	32.05	50.3
TraesCS7D01G389700.1	Wheat	plastid	40.93	46.09
TraesCS7B01G296300.1	Wheat	plastid	40.54	45.85
TraesCS7A01G394300.1	Wheat	plastid	40.54	45.65
KRH67837	Soybean	cytosol	21.24	41.04
Zm00001d046682_P001	Maize	plastid	36.29	40.34
Os06t0625500-01	Rice	plastid	35.91	40.09
KXG20408	Sorghum	plastid	35.91	39.91
Bra006963.1-P	Field mustard	plastid	23.94	35.63
GSMUA_Achr10P...	Banana	plastid	30.12	33.91
GSMUA_Achr5P15910_001	Banana	plastid	30.89	33.33
CDY68640	Canola	plastid	20.85	32.93
KRG96122	Soybean	nucleus	25.87	31.16
VIT_08s0007g03970.t01	Wine grape	plastid	27.03	30.57
CDX76246	Canola	plastid	26.64	30.13
PGSC0003DMT400007049	Potato	cytosol, plastid	27.03	30.04
AT3G52960.1	Thale cress	plastid	27.03	29.91
Bra019637.1-P	Field mustard	plastid	26.25	29.69
CDX73586	Canola	plastid	26.25	29.57
Solyc10g083650.1.1	Tomato	plastid	25.87	29.39
CDX78138	Canola	plastid	25.87	29.13
PGSC0003DMT400072641	Potato	mitochondrion, plastid	25.48	29.07

Protein Annotations

EnsemblPlants:TraesCSU01G031500.1	EnsemblPlantsGene:TraesCSU01G031500	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	InterPro:PRX5-like	InterPro:Redoxin	InterPro:Thioredoxin-like_sf	KEGG:00480+1.11.1.15
PANTHER:PTHR10430	PANTHER:PTHR10430:SF15	PFAM:PF08534	SEG:seg	SUPFAM:SSF52833	MapMan:10.4.3.2

Description

No Description!

Coordinates

chrUn:-:29285452..29286231

Molecular Weight (calculated)

26892.3 Da

IEP (calculated)

11.862

GRAVY (calculated)

-0.163

Length

259 amino acids

Sequence
(BLAST)

001: MLAWSSSPFT TTPRRLPLPR ATLSATAAAA GSRHALLSRG PSSSLSYASC RLAPAGPLRV RLPPRAATRA LSATASLAAT TTITVGERLP DATLSYFDSP
101: DGELKMVTVR DRTAGKNVVL FAVQGAFTPT CVQKHLPGFL ARAGELRAKG VDAVACVSVN DAFLMRRGAA ALGRQRGADA RHGHGAGPVG QAGEARRPVV
201: PLGREASNGG YCWRAPASLA SQDSHLTGSR RRKKKVAGAT GCRCSLASTR LHDGAARCT

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.