CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52960.1	CDY32970	AT5G42980.1	15352244
AT3G52960.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006963.1-P	Field mustard	plastid	73.04	96.55
CDX78138	Canola	plastid	96.09	96.09
CDY68640	Canola	plastid	63.91	89.63
CDX76246	Canola	plastid	83.04	83.41
AT3G52960.1	Thale cress	plastid	83.48	82.05
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	54.78	76.36
KRH67837	Soybean	cytosol	43.04	73.88
HORVU6Hr1G034620.1	Barley	plastid	60.0	61.06
GSMUA_Achr10P...	Banana	plastid	60.87	60.87
TraesCS6D01G158500.1	Wheat	plastid	59.57	60.62
TraesCS6B01G197100.1	Wheat	plastid	59.57	60.62
KRG96122	Soybean	nucleus	56.52	60.47
TraesCS6A01G169100.1	Wheat	plastid	59.13	60.18
CDY16429	Canola	cytosol	41.74	59.26
Os02t0192700-02	Rice	plastid	57.83	59.11
TraesCS7B01G296300.1	Wheat	plastid	57.83	58.08
EES06437	Sorghum	plastid	58.26	58.01
KXG20408	Sorghum	plastid	58.7	57.94
Solyc10g083650.1.1	Tomato	plastid	56.96	57.46
CDY07475	Canola	cytosol	40.43	57.41
CDY39257	Canola	cytosol	40.43	57.41
Os06t0625500-01	Rice	plastid	57.83	57.33
PGSC0003DMT400072641	Potato	mitochondrion, plastid	56.52	57.27
TraesCS7A01G394300.1	Wheat	plastid	56.96	56.96
Zm00001d046682_P001	Maize	plastid	56.96	56.22
PGSC0003DMT400007049	Potato	cytosol, plastid	56.96	56.22
TraesCS7D01G389700.1	Wheat	plastid	56.09	56.09
VIT_08s0007g03970.t01	Wine grape	plastid	55.22	55.46
GSMUA_Achr5P15910_001	Banana	plastid	56.52	54.17
CDY66099	Canola	cytosol	37.83	53.7
CDX75114	Canola	cytosol	37.83	53.7
CDY60867	Canola	plastid	43.91	49.03
CDY27714	Canola	mitochondrion	23.91	27.36
CDY05226	Canola	mitochondrion	23.04	26.37
TraesCSU01G031500.1	Wheat	mitochondrion, plastid	29.57	26.25

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	GO:A0A078C956	EnsemblPlants:CDX73586	ProteinID:CDX73586
ProteinID:CDX73586.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00109139001	InterPro:IPR013766	PFAM:PF08534
InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF29	InterPro:Redoxin	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0004EF02FF	SEG:seg	:	:

Description

BnaC08g24170D

Coordinates

chrLK031799:-:1448117..1452102

Molecular Weight (calculated)

24161.9 Da

IEP (calculated)

8.719

GRAVY (calculated)

0.117

Length

230 amino acids

Sequence
(BLAST)

001: MATSLSVSRL ISSSAISVAK PLLSPTSAFT APISFSRSLA PNLSFKSHSR RSSISAVRSF STTTISASIS VGDKLPDSTL SYLDPATNDV KTVTVSSLTA
101: GKKTILFAVP GAFTPTCSQK HVPGFVSKAG ELRSKGVDVI ACVSVNDAFV MEAWRKDLGI EDEVMLLSDG NGEFTGKLGV ELDLRDKPVG LGVRSRRYAI
201: LAEDGVVKVL NLEEGGAFTN SGAEDMLKAL

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.