Factsheet for Zm00001d046682_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52960.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	66.95	94.55
KXG20408	Sorghum	plastid	80.69	80.69
Os06t0625500-01	Rice	plastid	77.25	77.59
KRH67837	Soybean	cytosol	43.78	76.12
TraesCS7D01G389700.1	Wheat	plastid	74.68	75.65
TraesCS7A01G394300.1	Wheat	plastid	74.68	75.65
TraesCS7B01G296300.1	Wheat	plastid	74.25	75.55
Bra006963.1-P	Field mustard	plastid	54.94	73.56
CDY68640	Canola	plastid	51.07	72.56
GSMUA_Achr10P...	Banana	plastid	60.94	61.74
KRG96122	Soybean	nucleus	54.94	59.53
CDX78138	Canola	plastid	57.08	57.83
AT3G52960.1	Thale cress	plastid	57.51	57.27
Bra019637.1-P	Field mustard	plastid	56.22	57.21
CDX73586	Canola	plastid	56.22	56.96
CDX76246	Canola	plastid	55.79	56.77
GSMUA_Achr5P15910_001	Banana	plastid	57.94	56.25
PGSC0003DMT400072641	Potato	mitochondrion, plastid	54.51	55.95
Solyc10g083650.1.1	Tomato	plastid	54.51	55.7
Zm00001d011581_P001	Maize	plastid	38.63	55.56
PGSC0003DMT400007049	Potato	cytosol, plastid	54.51	54.51
VIT_08s0007g03970.t01	Wine grape	plastid	53.22	54.15
TraesCSU01G031500.1	Wheat	mitochondrion, plastid	40.34	36.29
Zm00001d040341_P001	Maize	mitochondrion	24.03	29.02

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	ProteinID:AQL04842.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766	UniProt:K7VFF7	PFAM:PF08534
InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF15	InterPro:Redoxin	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00019AA964	EnsemblPlantsGene:Zm00001d046682	EnsemblPlants:Zm00001d046682_P001	EnsemblPlants:Zm00001d046682_T001
SEG:seg	:	:	:	:	:

Description

Peroxiredoxin-5

Coordinates

chr9:-:102206373..102207074

Molecular Weight (calculated)

23761.6 Da

IEP (calculated)

8.728

GRAVY (calculated)

0.250

Length

233 amino acids

Sequence
(BLAST)

001: MATSALAALS ATAAAAGKRI LLSRPASSSS LSFASRRLAA GAPLRGFLGA PIRAVASSAS AAPAAAAKTI AVGDRLPDAT LSYFDTSSPD GELKTVTVRD
101: LTAGKKVVLF AVPGAFTPTC TQKHLPGFVA KAGELRAKGV DTVACVSVND AFVMRAWKES LGIGDEVLLL SDGNGELARA MGVELDLSDK PVGLGVRSRR
201: YALLAEDGVV KVINLEEGGA FTNSSAEDML NAL

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.