Factsheet for TraesCS7B01G296300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52960.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT3G52960.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	70.74	98.18
TraesCS7D01G389700.1	Wheat	plastid	91.27	90.87
TraesCS7A01G394300.1	Wheat	plastid	91.27	90.87
Os06t0625500-01	Rice	plastid	76.86	75.86
KRH67837	Soybean	cytosol	44.1	75.37
Zm00001d046682_P001	Maize	plastid	75.55	74.25
Bra006963.1-P	Field mustard	plastid	55.46	72.99
CDY68640	Canola	plastid	51.97	72.56
KXG20408	Sorghum	plastid	73.36	72.1
TraesCS6B01G197100.1	Wheat	plastid	69.87	70.8
GSMUA_Achr10P...	Banana	plastid	62.88	62.61
KRG96122	Soybean	nucleus	56.33	60.0
CDX76246	Canola	plastid	58.95	58.95
Solyc10g083650.1.1	Tomato	plastid	58.52	58.77
GSMUA_Achr5P15910_001	Banana	plastid	61.57	58.75
PGSC0003DMT400072641	Potato	mitochondrion, plastid	58.08	58.59
Bra019637.1-P	Field mustard	plastid	58.52	58.52
CDX78138	Canola	plastid	58.52	58.26
CDX73586	Canola	plastid	58.08	57.83
AT3G52960.1	Thale cress	plastid	58.52	57.27
TraesCS3B01G304100.1	Wheat	cytosol	39.3	55.56
VIT_08s0007g03970.t01	Wine grape	plastid	55.46	55.46
PGSC0003DMT400007049	Potato	cytosol, plastid	55.46	54.51
TraesCSU01G031500.1	Wheat	mitochondrion, plastid	45.85	40.54
TraesCS3B01G213200.2	Wheat	mitochondrion	25.33	30.05

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766
PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF15	InterPro:Redoxin
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	EnsemblPlantsGene:TraesCS7B01G296300	EnsemblPlants:TraesCS7B01G296300.1	TIGR:cd03013
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:532656512..532657201

Molecular Weight (calculated)

23541.3 Da

IEP (calculated)

9.242

GRAVY (calculated)

0.166

Length

229 amino acids

Sequence
(BLAST)

001: MATSALATLS ATAAAAGARR VLLSRGPSSL SFASRRLASA GPLRAGPLPR AATRALSATA SPAATTTIAV GDRLPDATLS YFDAPDGELK TVTVRDLTAG
101: KKVVLFAVPG AFTPTCTQKH LPGFVARAGE LRAKGVDTVA CVSVNDAFVM RAWKESLGVG DEVLLLSDGN GELTRAMGVE LDLSDKPVGL GVRSRRYALL
201: ADDGVVKVLN LEEGGAFTNS SAEDMLKAL

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.