Factsheet for Bra006963.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 4
peroxisome 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52960.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	72.99	76.97
CDX78138	Canola	plastid	97.7	73.91
KRH67837	Soybean	cytosol	56.9	73.88
CDX73586	Canola	plastid	96.55	73.04
Bra019637.1-P	Field mustard	plastid	91.95	69.87
AT3G52960.1	Thale cress	plastid	91.95	68.38
Bra039747.1-P	Field mustard	peroxisome	56.32	60.49
GSMUA_Achr10P...	Banana	plastid	78.16	59.13
KRG96122	Soybean	nucleus	71.84	58.14
Bra004138.1-P	Field mustard	cytosol	54.02	58.02
TraesCS6D01G158500.1	Wheat	plastid	74.14	57.08
TraesCS6B01G197100.1	Wheat	plastid	74.14	57.08
TraesCS6A01G169100.1	Wheat	plastid	74.14	57.08
HORVU6Hr1G034620.1	Barley	plastid	74.14	57.08
Os02t0192700-02	Rice	plastid	73.56	56.89
KXG20408	Sorghum	plastid	74.71	55.79
TraesCS7B01G296300.1	Wheat	plastid	72.99	55.46
Os06t0625500-01	Rice	plastid	73.56	55.17
EES06437	Sorghum	plastid	72.99	54.98
Zm00001d046682_P001	Maize	plastid	73.56	54.94
Solyc10g083650.1.1	Tomato	plastid	71.84	54.82
TraesCS7A01G394300.1	Wheat	plastid	72.41	54.78
TraesCS7D01G389700.1	Wheat	plastid	72.41	54.78
Bra038378.1-P	Field mustard	cytosol	50.57	54.32
PGSC0003DMT400072641	Potato	mitochondrion, plastid	70.69	54.19
GSMUA_Achr5P15910_001	Banana	plastid	72.99	52.92
VIT_08s0007g03970.t01	Wine grape	plastid	68.39	51.97
PGSC0003DMT400007049	Potato	cytosol, plastid	69.54	51.93
Bra020782.1-P	Field mustard	mitochondrion	29.31	25.37
TraesCSU01G031500.1	Wheat	mitochondrion, plastid	35.63	23.94

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	EnsemblPlantsGene:Bra006963	EnsemblPlants:Bra006963.1	EnsemblPlants:Bra006963.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766
UniProt:M4CRX1	PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF29
InterPro:Redoxin	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002542EB3	SEG:seg

Description

AT3G52960 (E=4e-085) | peroxiredoxin type 2, putative

Coordinates

chrA09:+:26552363..26553348

Molecular Weight (calculated)

18313.9 Da

IEP (calculated)

4.993

GRAVY (calculated)

0.091

Length

174 amino acids

Sequence
(BLAST)

001: MKSFSATTIS ASISVGDKLP DSTLSYLDPA TNDVKTVTVS SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG VDVIACVSVN DAFVMEAWRK
101: DLGISDEVIL LSDGNGEFTG KLGVELDLRD KPVGLGVRSR RYAILAEDGV VKVLNLEEGG AFTNSSAEDM LKAL

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.