Factsheet for HORVU6Hr1G034620.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
peroxisome 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G075560.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52960.1	HORVU1Hr1G075560.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G158500.1	Wheat	plastid	94.69	94.69
TraesCS6A01G169100.1	Wheat	plastid	93.81	93.81
TraesCS6B01G197100.1	Wheat	plastid	93.81	93.81
HORVU7Hr1G093020.1	Barley	cytosol, peroxisome	64.16	87.88
Os02t0192700-02	Rice	plastid	79.2	79.56
EES06437	Sorghum	plastid	78.76	77.06
KRH67837	Soybean	cytosol	45.13	76.12
Bra006963.1-P	Field mustard	plastid	57.08	74.14
CDY68640	Canola	plastid	51.33	70.73
GSMUA_Achr10P...	Banana	plastid	66.81	65.65
CDX78138	Canola	plastid	62.83	61.74
KRG96122	Soybean	nucleus	57.96	60.93
CDX73586	Canola	plastid	61.06	60.0
PGSC0003DMT400072641	Potato	mitochondrion, plastid	57.96	57.71
Bra019637.1-P	Field mustard	plastid	58.41	57.64
AT3G52960.1	Thale cress	plastid	59.29	57.27
VIT_08s0007g03970.t01	Wine grape	plastid	57.96	57.21
CDX76246	Canola	plastid	57.96	57.21
Solyc10g083650.1.1	Tomato	plastid	57.52	57.02
GSMUA_Achr5P15910_001	Banana	plastid	60.18	56.67
PGSC0003DMT400007049	Potato	cytosol, plastid	55.75	54.08
HORVU3Hr1G062040.1	Barley	mitochondrion	43.36	47.12
HORVU3Hr1G037720.1	Barley	mitochondrion	25.66	30.05

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	EMBL:AK358634	EMBL:AK360334	UniProt:F2D426
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	EnsemblPlantsGene:HORVU6Hr1G034620
EnsemblPlants:HORVU6Hr1G034620.1	InterPro:IPR013766	PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430
PANTHER:PTHR10430:SF15	InterPro:Redoxin	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00020052F8
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D426]

Coordinates

chrchr6H:-:162622523..162623849

Molecular Weight (calculated)

23328.1 Da

IEP (calculated)

6.002

GRAVY (calculated)

0.248

Length

226 amino acids

Sequence
(BLAST)

001: MATASLSALS SSAAAAGRRF VLSSPSLAFA SRRIAAPARL RAAVLPGERR FAASAASASP VVATIAVGDK LPDATLSYFD PADGELKTVT VGDLTAGKKV
101: VLFAVPGAFT PTCSQKHLPG FVEKAGELRA KGVDTVACVS VNDAFVMKAW KESLGLGDDV LLLSDGNLEL TRALGVEMDL SDKPMGLGVR SRRYALLADD
201: GVVKVLNLEE GGAFTTSSAE EMLNAL

Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)

001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL

Arabidopsis Description

PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.