Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G158500.1 | Wheat | plastid | 98.67 | 98.67 |
| TraesCS6B01G197100.1 | Wheat | plastid | 97.79 | 97.79 |
| HORVU6Hr1G034620.1 | Barley | plastid | 93.81 | 93.81 |
| Os02t0192700-02 | Rice | plastid | 81.86 | 82.22 |
| EES06437 | Sorghum | plastid | 78.32 | 76.62 |
| KRH67837 | Soybean | cytosol | 44.25 | 74.63 |
| Bra006963.1-P | Field mustard | plastid | 57.08 | 74.14 |
| CDY68640 | Canola | plastid | 50.88 | 70.12 |
| TraesCS7A01G394300.1 | Wheat | plastid | 69.03 | 67.83 |
| GSMUA_Achr10P... | Banana | plastid | 66.81 | 65.65 |
| CDX78138 | Canola | plastid | 61.95 | 60.87 |
| KRG96122 | Soybean | nucleus | 57.52 | 60.47 |
| TraesCS3A01G270300.1 | Wheat | cytosol | 42.48 | 59.26 |
| CDX73586 | Canola | plastid | 60.18 | 59.13 |
| Bra019637.1-P | Field mustard | plastid | 57.96 | 57.21 |
| CDX76246 | Canola | plastid | 57.52 | 56.77 |
| GSMUA_Achr5P15910_001 | Banana | plastid | 60.18 | 56.67 |
| AT3G52960.1 | Thale cress | plastid | 58.41 | 56.41 |
| PGSC0003DMT400072641 | Potato | mitochondrion, plastid | 56.19 | 55.95 |
| Solyc10g083650.1.1 | Tomato | plastid | 55.75 | 55.26 |
| VIT_08s0007g03970.t01 | Wine grape | plastid | 55.75 | 55.02 |
| PGSC0003DMT400007049 | Potato | cytosol, plastid | 54.42 | 52.79 |
| TraesCS3A01G183500.1 | Wheat | mitochondrion | 23.89 | 28.12 |
Protein Annotations
| KEGG:00480+1.11.1.15 | MapMan:10.4.3.2 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016491 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR013766 |
| PFAM:PF08534 | InterPro:PRX5-like | PFscan:PS51352 | PANTHER:PTHR10430 | PANTHER:PTHR10430:SF15 | InterPro:Redoxin |
| SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | EnsemblPlantsGene:TraesCS6A01G169100 | EnsemblPlants:TraesCS6A01G169100.1 | TIGR:cd03013 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:176573774..176574454
Molecular Weight (calculated)
23274.1 Da
IEP (calculated)
9.183
GRAVY (calculated)
0.241
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MATASLSALS SAAAAAGKRF VISSPSLSFA SRRIAAPARL RAAAVPGARR FAASAASAST VVATIAVGDK LPDATLSYFD PADGELKTVT VGELTAGKKV
101: VLFAVPGAFT PTCSQKHLPG FIEKAGELRA KGVDTVACVS VNDAFVMKAW KESLGLGKDV QLLSDGNIEL TRALGVEMDL SDKPMGLGVR SRRYALLADD
201: GVVKVLNLEE GGAFTTSSAE EMLKAL
101: VLFAVPGAFT PTCSQKHLPG FIEKAGELRA KGVDTVACVS VNDAFVMKAW KESLGLGKDV QLLSDGNIEL TRALGVEMDL SDKPMGLGVR SRRYALLADD
201: GVVKVLNLEE GGAFTTSSAE EMLKAL
001: MAPIAVGDVV PDGTISFFDE NDQLQTASVH SLAAGKKVIL FGVPGAFTPT CSMKHVPGFI EKAEELKSKG VDEIICFSVN DPFVMKAWGK TYPENKHVKF
101: VADGSGEYTH LLGLELDLKD KGLGVRSRRF ALLLDDLKVT VANVESGGEF TVSSADDILK AL
101: VADGSGEYTH LLGLELDLKD KGLGVRSRRF ALLLDDLKVT VANVESGGEF TVSSADDILK AL
Arabidopsis Description
PRXIIBPeroxiredoxin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9XEX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.