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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • peroxisome 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, peroxisome, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:peroxisome
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:nucleus, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 20363867
plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400072641 Potato mitochondrion, plastid 92.98 93.39
HORVU7Hr1G093020.1 Barley cytosol, peroxisome 53.95 74.55
KRH67837 Soybean cytosol 42.98 73.13
Bra006963.1-P Field mustard plastid 54.82 71.84
CDY68640 Canola plastid 49.12 68.29
KRG96122 Soybean nucleus 59.65 63.26
Solyc07g020860.2.1 Tomato plastid 44.74 62.96
VIT_08s0007g03970.t01 Wine grape plastid 62.28 62.01
GSMUA_Achr10P... Banana plastid 59.21 58.7
TraesCS7B01G296300.1 Wheat plastid 58.77 58.52
Os02t0192700-02 Rice plastid 57.02 57.78
HORVU6Hr1G034620.1 Barley plastid 57.02 57.52
CDX78138 Canola plastid 57.89 57.39
TraesCS7A01G394300.1 Wheat plastid 57.89 57.39
CDX73586 Canola plastid 57.46 56.96
TraesCS7D01G389700.1 Wheat plastid 57.46 56.96
EES06437 Sorghum plastid 57.02 56.28
TraesCS6B01G197100.1 Wheat plastid 55.7 56.19
TraesCS6D01G158500.1 Wheat plastid 55.7 56.19
AT3G52960.1 Thale cress plastid 57.46 55.98
Bra019637.1-P Field mustard plastid 56.14 55.9
TraesCS6A01G169100.1 Wheat plastid 55.26 55.75
CDX76246 Canola plastid 55.7 55.46
Os06t0625500-01 Rice plastid 55.7 54.74
Zm00001d046682_P001 Maize plastid 55.7 54.51
KXG20408 Sorghum plastid 54.82 53.65
GSMUA_Achr5P15910_001 Banana plastid 56.14 53.33
Solyc01g079820.2.1 Tomato extracellular 26.75 32.11
TraesCSU01G031500.1 Wheat mitochondrion, plastid 29.39 25.87
Protein Annotations
KEGG:00480+1.11.1.15MapMan:10.4.3.2Gene3D:3.40.30.10GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005623GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016491GO:GO:0019725
GO:GO:0045454GO:GO:0055114InterPro:IPR013766UniProt:K4D3F2PFAM:PF08534InterPro:PRX5-like
PFscan:PS51352PANTHER:PTHR10430PANTHER:PTHR10430:SF29InterPro:RedoxinSUPFAM:SSF52833EnsemblPlantsGene:Solyc10g083650.1
EnsemblPlants:Solyc10g083650.1.1InterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domainUniParc:UPI0002769F2ESEG:seg:
Description
No Description!
Coordinates
chr10:-:63438582..63439268
Molecular Weight (calculated)
24437.5 Da
IEP (calculated)
8.623
GRAVY (calculated)
0.094
Length
228 amino acids
Sequence
(BLAST)
001: MAATTAAAIF TLPKLCKSSI SPKSISLFSP KSTLSSSFSI SSVPFKVHHS KRTVRPLSYT TPRISAVISV GDKLPNSTLS YFDSSDELQT LSVSDLTSGK
101: KVVLFAVPGA FTPTCSQKHL PGFVEKSKEL KSKGVDTIAC ISVNDAFVMK AWKENLNISD EVLLLSDGNL EFTKAIGCEL DLTDKPIGLG VRSRRYAMLV
201: DDGVVKVLNL EEGGAFNVSS AEDILKAL
Best Arabidopsis Sequence Match ( AT3G52960.1 )
(BLAST)
001: MATSLSVSRF MSSSATVISV AKPLLSPTVS FTAPLSFTRS LAPNLSLKFR NRRTNSASAT TRSFATTPVT ASISVGDKLP DSTLSYLDPS TGDVKTVTVS
101: SLTAGKKTIL FAVPGAFTPT CSQKHVPGFV SKAGELRSKG IDVIACISVN DAFVMEAWRK DLGINDEVML LSDGNGEFTG KLGVELDLRD KPVGLGVRSR
201: RYAILADDGV VKVLNLEEGG AFTNSSAEDM LKAL
Arabidopsis Description
PRXIIEPeroxiredoxin-2E, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q949U7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.