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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 2
  • mitochondrion 9
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 extracellular: 22892874
plastid: 26371478
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22892874 doi
EH Konozy, H Rogniaux, M Causse, M Faurobert
Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400023223 Potato extracellular 98.95 98.95
HORVU3Hr1G037720.1 Barley mitochondrion 77.37 76.17
TraesCS3D01G187600.2 Wheat mitochondrion 76.84 75.65
TraesCS3B01G213200.2 Wheat mitochondrion 75.79 74.61
TraesCS3A01G183500.1 Wheat mitochondrion 75.26 74.48
GSMUA_Achr8P09520_001 Banana mitochondrion 76.32 73.6
Zm00001d040341_P001 Maize mitochondrion 74.74 73.58
OQU86665 Sorghum mitochondrion 74.21 73.06
Os01t0266600-01 Rice mitochondrion 75.26 72.22
KRH20884 Soybean mitochondrion 74.21 71.57
KRH11395 Soybean nucleus 73.16 70.56
VIT_05s0020g02850.t01 Wine grape mitochondrion 74.21 70.15
CDY05226 Canola mitochondrion 73.68 69.65
AT3G06050.1 Thale cress mitochondrion 73.16 69.15
CDY27714 Canola mitochondrion 73.16 69.15
Bra020782.1-P Field mustard mitochondrion 73.16 69.15
Solyc07g020860.2.1 Tomato plastid 28.42 33.33
Solyc10g083650.1.1 Tomato plastid 32.11 26.75
Protein Annotations
KEGG:00480+1.11.1.15MapMan:10.4.3.2Gene3D:3.40.30.10GO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005623GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016491GO:GO:0019725
GO:GO:0045454GO:GO:0055114GO:GO:0098869InterPro:IPR013766UniProt:K4AXM7PFAM:PF08534
InterPro:PRX5-likePFscan:PS51352PANTHER:PTHR10430PANTHER:PTHR10430:SF16InterPro:RedoxinSUPFAM:SSF52833
EnsemblPlantsGene:Solyc01g079820.2EnsemblPlants:Solyc01g079820.2.1InterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domainUniParc:UPI0002761F3E:
Description
Peroxiredoxin-2F, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G06050) UniProtKB/Swiss-Prot;Acc:Q9M7T0]
Coordinates
chr1:-:78948285..78952100
Molecular Weight (calculated)
20573.6 Da
IEP (calculated)
8.654
GRAVY (calculated)
-0.022
Length
190 amino acids
Sequence
(BLAST)
001: MASAILKRTR MMAQSLRSYA SISVGSDVTV AAPNVSLQKA RSWDEGVSSK FSTTPIKDIF KGKNVVIFGL PGAYTGVCSM QHVPSYKNNI DKFKAKGIDS
101: VICVAVNDPY TMNGWAEKLQ AKDAIEFYGD FDGSFHKSLD LTIDLSAALL GLRSHRWSAY VVDGNVKVLN VEEAPSDFKV SGGDVILGQI
Best Arabidopsis Sequence Match ( AT3G06050.1 )
(BLAST)
001: MAMSILKLRN LSALRSAANS ARIGVSSRGF SKLAEGTDIT SAAPGVSLQK ARSWDEGVSS KFSTTPLSDI FKGKKVVIFG LPGAYTGVCS QQHVPSYKSH
101: IDKFKAKGID SVICVSVNDP FAINGWAEKL GAKDAIEFYG DFDGKFHKSL GLDKDLSAAL LGPRSERWSA YVEDGKVKAV NVEEAPSDFK VTGAEVILGQ
201: I
Arabidopsis Description
PRXIIFPRXIIF [Source:UniProtKB/TrEMBL;Acc:A0A178VBA5]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.