CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11395	Soybean	nucleus	98.48	98.48
Solyc01g079820.2.1	Tomato	extracellular	71.57	74.21
PGSC0003DMT400023223	Potato	extracellular	71.57	74.21
VIT_05s0020g02850.t01	Wine grape	mitochondrion	75.63	74.13
TraesCS3A01G183500.1	Wheat	mitochondrion	71.57	73.44
HORVU3Hr1G037720.1	Barley	mitochondrion	71.07	72.54
TraesCS3D01G187600.2	Wheat	mitochondrion	70.56	72.02
TraesCS3B01G213200.2	Wheat	mitochondrion	69.54	70.98
KRH20883	Soybean	mitochondrion	70.56	70.92
Zm00001d040341_P001	Maize	mitochondrion	69.04	70.47
OQU86665	Sorghum	mitochondrion	68.53	69.95
AT3G06050.1	Thale cress	mitochondrion	71.07	69.65
CDY05226	Canola	mitochondrion	71.07	69.65
Bra020782.1-P	Field mustard	mitochondrion	70.56	69.15
CDY27714	Canola	mitochondrion	70.56	69.15
Os01t0266600-01	Rice	mitochondrion	69.04	68.69
GSMUA_Achr8P09520_001	Banana	mitochondrion	68.02	68.02
KRH11396	Soybean	cytosol	48.73	67.61
KRH67837	Soybean	cytosol	22.34	32.84
KRH48355	Soybean	endoplasmic reticulum, nucleus	25.89	31.48
KRH39322	Soybean	endoplasmic reticulum, nucleus	25.89	31.48
KRH48905	Soybean	cytosol	12.18	30.77
KRG96122	Soybean	nucleus	29.95	27.44

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	EntrezGene:100500096	Gene3D:3.40.30.10	EMBL:ACUP02008324	EMBL:BT090826
UniProt:C6T073	EnsemblPlantsGene:GLYMA_13G207000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454
GO:GO:0055114	InterPro:IPR013766	EnsemblPlants:KRH20884	ProteinID:KRH20884	ProteinID:KRH20884.1	PFAM:PF08534
InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF16	InterPro:Redoxin	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00019AA963	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:32069456..32071761

Molecular Weight (calculated)

21170.3 Da

IEP (calculated)

9.011

GRAVY (calculated)

-0.087

Length

197 amino acids

Sequence
(BLAST)

001: MASAMVNRGG SRIIKSVSAA LGTRFYAKVA TGTDIVSAAP NVSLQKARTW DEGLASKFST TPLKDIFKDK KVVIFGLPGA YTGVCSNKHV PPYKENIDKF
101: KAKGIDSVIC VAINDPYTMN AWAEKLQAKD AIEFYGDFDG SFHKSLELVT DLSGALLGTR SERWSAYVVD GKVKALNVEE APSDVKVSGA DTILGQI

Best Arabidopsis Sequence Match ( AT3G06050.1 )
(BLAST)

001: MAMSILKLRN LSALRSAANS ARIGVSSRGF SKLAEGTDIT SAAPGVSLQK ARSWDEGVSS KFSTTPLSDI FKGKKVVIFG LPGAYTGVCS QQHVPSYKSH
101: IDKFKAKGID SVICVSVNDP FAINGWAEKL GAKDAIEFYG DFDGKFHKSL GLDKDLSAAL LGPRSERWSA YVEDGKVKAV NVEEAPSDFK VTGAEVILGQ
201: I

Arabidopsis Description

PRXIIFPRXIIF [Source:UniProtKB/TrEMBL;Acc:A0A178VBA5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.