CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 3
peroxisome 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48355	Soybean	endoplasmic reticulum, nucleus	98.77	98.77
KRH48905	Soybean	cytosol	43.21	89.74
PGSC0003DMT400013068	Potato	extracellular	79.63	79.63
Solyc07g020860.2.1	Tomato	plastid	79.01	79.01
AT1G65980.1	Thale cress	cytosol	76.54	76.54
VIT_11s0016g03630.t01	Wine grape	cytosol	76.54	76.54
Bra039747.1-P	Field mustard	peroxisome	76.54	76.54
TraesCS3B01G304100.1	Wheat	cytosol	76.54	76.54
TraesCS3A01G270300.1	Wheat	cytosol	76.54	76.54
TraesCS3D01G270100.1	Wheat	cytosol	75.93	75.93
CDY16429	Canola	cytosol	75.93	75.93
Zm00001d011581_P001	Maize	plastid	74.69	74.69
EES03426	Sorghum	cytosol	74.69	74.69
GSMUA_Achr10P...	Banana	extracellular	54.94	73.55
AT1G65970.1	Thale cress	cytosol	73.46	73.46
CDY39257	Canola	cytosol	73.46	73.46
CDY07475	Canola	cytosol	73.46	73.46
Bra004138.1-P	Field mustard	cytosol	73.46	73.46
AT1G60740.1	Thale cress	cytosol	72.22	72.22
Os01t0675100-01	Rice	extracellular, plasma membrane, plastid	70.37	70.37
CDY66099	Canola	cytosol	67.28	67.28
CDX75114	Canola	cytosol	67.28	67.28
Bra038378.1-P	Field mustard	cytosol	67.28	67.28
CDY60867	Canola	plastid	76.54	60.19
HORVU3Hr1G062040.1	Barley	mitochondrion	75.31	58.65
KRH67837	Soybean	cytosol	43.83	52.99
KRG96122	Soybean	nucleus	53.09	40.0
KRH11396	Soybean	cytosol	27.16	30.99
KRH11395	Soybean	nucleus	32.1	26.4
KRH20883	Soybean	mitochondrion	31.48	26.02
KRH20884	Soybean	mitochondrion	31.48	25.89

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	UniProt:A0A0R0IAF2	EMBL:ACUP02005930	EnsemblPlantsGene:GLYMA_09G192800
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	InterPro:IPR013766
EnsemblPlants:KRH39322	ProteinID:KRH39322	ProteinID:KRH39322.1	PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352
PANTHER:PTHR10430	PANTHER:PTHR10430:SF8	InterPro:Redoxin	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI00019AA961	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:41741863..41743212

Molecular Weight (calculated)

17396.1 Da

IEP (calculated)

5.720

GRAVY (calculated)

0.117

Length

162 amino acids

Sequence
(BLAST)

001: MAPIAVGNVI PDGILAYLDE ENKPQTVSIH SLATGKKVII FGVPGAFTPT CSLKHVPGFI ERAEELKGKG VDEIICISVN DPFVMNSWAK TFPENKHVKF
101: LADGAAKYTN ALGLELDLTD KGLGVRSKRF ALLVEDLKVK VANVESGGEF TISSAEEIIK AL

Best Arabidopsis Sequence Match ( AT1G65980.1 )
(BLAST)

001: MAPIAVGDVV PDGTISFFDE NDQLQTASVH SLAAGKKVIL FGVPGAFTPT CSMKHVPGFI EKAEELKSKG VDEIICFSVN DPFVMKAWGK TYPENKHVKF
101: VADGSGEYTH LLGLELDLKD KGLGVRSRRF ALLLDDLKVT VANVESGGEF TVSSADDILK AL

Arabidopsis Description

PRXIIBPeroxiredoxin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9XEX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.