Factsheet for Solyc07g020860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
peroxisome 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013068	Potato	extracellular	98.15	98.15
AT1G65980.1	Thale cress	cytosol	82.72	82.72
VIT_11s0016g03630.t01	Wine grape	cytosol	82.1	82.1
Bra039747.1-P	Field mustard	peroxisome	81.48	81.48
CDY16429	Canola	cytosol	80.86	80.86
GSMUA_Achr10P...	Banana	extracellular	59.88	80.17
KRH48355	Soybean	endoplasmic reticulum, nucleus	79.63	79.63
Bra004138.1-P	Field mustard	cytosol	79.01	79.01
CDY07475	Canola	cytosol	79.01	79.01
CDY39257	Canola	cytosol	79.01	79.01
KRH39322	Soybean	endoplasmic reticulum, nucleus	79.01	79.01
AT1G65970.1	Thale cress	cytosol	78.4	78.4
AT1G60740.1	Thale cress	cytosol	77.16	77.16
Zm00001d011581_P001	Maize	plastid	76.54	76.54
EES03426	Sorghum	cytosol	75.93	75.93
TraesCS3A01G270300.1	Wheat	cytosol	74.69	74.69
TraesCS3B01G304100.1	Wheat	cytosol	74.69	74.69
TraesCS3D01G270100.1	Wheat	cytosol	74.69	74.69
Os01t0675100-01	Rice	extracellular, plasma membrane, plastid	72.22	72.22
KRH48905	Soybean	cytosol	33.95	70.51
CDY66099	Canola	cytosol	68.52	68.52
CDX75114	Canola	cytosol	68.52	68.52
Bra038378.1-P	Field mustard	cytosol	68.52	68.52
CDY60867	Canola	plastid	80.25	63.11
HORVU3Hr1G062040.1	Barley	mitochondrion	73.46	57.21
Solyc10g083650.1.1	Tomato	plastid	62.96	44.74
Solyc01g079820.2.1	Tomato	extracellular	33.33	28.42

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	Gene3D:3.40.30.10	EMBL:AY281152	GO:GO:0003674	GO:GO:0003824
GO:GO:0004601	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766
PFAM:PF08534	InterPro:PRX5-like	PFscan:PS51352	PANTHER:PTHR10430	PANTHER:PTHR10430:SF8	UniProt:Q7Y240
InterPro:Redoxin	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc07g020860.2	EnsemblPlants:Solyc07g020860.2.1	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI000019AC82	:	:	:	:	:

Description

Thioredoxin peroxidase 1 [Source:UniProtKB/TrEMBL;Acc:Q7Y240]

Coordinates

chr7:+:14295272..14300912

Molecular Weight (calculated)

17438.0 Da

IEP (calculated)

4.988

GRAVY (calculated)

0.063

Length

162 amino acids

Sequence
(BLAST)

001: MAPIAVGDVI PDGTVSYFDE QDQMQTVSVY SLAKGKKVII FAVPGAFTPT CSMKHVPGFI EKAAELKSKG VDEILCISVN DPFVMKAWAK TYPENKHVKF
101: LADGAGKYTH ALGLELDLSD KGLGVRSRRY ALLVDDLEVK VANIESGGEF TVSGADEIVN AL

Best Arabidopsis Sequence Match ( AT1G65980.1 )
(BLAST)

001: MAPIAVGDVV PDGTISFFDE NDQLQTASVH SLAAGKKVIL FGVPGAFTPT CSMKHVPGFI EKAEELKSKG VDEIICFSVN DPFVMKAWGK TYPENKHVKF
101: VADGSGEYTH LLGLELDLKD KGLGVRSRRF ALLLDDLKVT VANVESGGEF TVSSADDILK AL

Arabidopsis Description

PRXIIBPeroxiredoxin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9XEX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.