Factsheet for PGSC0003DMT400023223

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117
mitochondrion: 24351685
extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079820.2.1	Tomato	extracellular	98.95	98.95
HORVU3Hr1G037720.1	Barley	mitochondrion	77.37	76.17
TraesCS3D01G187600.2	Wheat	mitochondrion	76.84	75.65
TraesCS3B01G213200.2	Wheat	mitochondrion	75.79	74.61
TraesCS3A01G183500.1	Wheat	mitochondrion	75.26	74.48
GSMUA_Achr8P09520_001	Banana	mitochondrion	76.84	74.11
Zm00001d040341_P001	Maize	mitochondrion	74.74	73.58
OQU86665	Sorghum	mitochondrion	74.21	73.06
Os01t0266600-01	Rice	mitochondrion	75.26	72.22
KRH20884	Soybean	mitochondrion	74.21	71.57
KRH11395	Soybean	nucleus	73.16	70.56
VIT_05s0020g02850.t01	Wine grape	mitochondrion	74.21	70.15
CDY05226	Canola	mitochondrion	73.68	69.65
AT3G06050.1	Thale cress	mitochondrion	73.16	69.15
CDY27714	Canola	mitochondrion	73.16	69.15
Bra020782.1-P	Field mustard	mitochondrion	73.16	69.15
PGSC0003DMT400013068	Potato	extracellular	30.0	35.19
PGSC0003DMT400007049	Potato	cytosol, plastid	33.16	27.04
PGSC0003DMT400072641	Potato	mitochondrion, plastid	32.11	26.87

Protein Annotations

KEGG:00480+1.11.1.15	MapMan:10.4.3.2	EntrezGene:102583739	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019725	GO:GO:0045454	GO:GO:0055114	GO:GO:0098869	InterPro:IPR013766	UniProt:M1AHZ8
PFAM:PF08534	EnsemblPlantsGene:PGSC0003DMG400008994	PGSC:PGSC0003DMG400008994	EnsemblPlants:PGSC0003DMT400023223	InterPro:PRX5-like	PFscan:PS51352
PANTHER:PTHR10430	PANTHER:PTHR10430:SF16	InterPro:Redoxin	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI00029692A9	RefSeq:XP_006349225.1	:	:	:	:

Description

Peroxiredoxin [Source:PGSC_GENE;Acc:PGSC0003DMG400008994]

Coordinates

chr1:+:62088076..62091929

Molecular Weight (calculated)

20577.6 Da

IEP (calculated)

8.654

GRAVY (calculated)

-0.037

Length

190 amino acids

Sequence
(BLAST)

001: MASAMLKRTR MMAQSLRSYA SISVGSDVTV AAPNVSLQKA RSWDEGVSSK FSTTPVKDIF KGKNVVIFGL PGAYTGVCSM QHVPSYKNNI DKFKAKGIDS
101: VICVAVNDPY TMNGWAEKLQ AKDAIEFYGD FDGSFHKSLD LTIDLSAALL GLRSHRWSAY VVDGNVKVLN VEEAPSDFKV SGGDVILGQI

Best Arabidopsis Sequence Match ( AT3G06050.1 )
(BLAST)

001: MAMSILKLRN LSALRSAANS ARIGVSSRGF SKLAEGTDIT SAAPGVSLQK ARSWDEGVSS KFSTTPLSDI FKGKKVVIFG LPGAYTGVCS QQHVPSYKSH
101: IDKFKAKGID SVICVSVNDP FAINGWAEKL GAKDAIEFYG DFDGKFHKSL GLDKDLSAAL LGPRSERWSA YVEDGKVKAV NVEEAPSDFK VTGAEVILGQ
201: I

Arabidopsis Description

PRXIIFPRXIIF [Source:UniProtKB/TrEMBL;Acc:A0A178VBA5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.